Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 292 a.a., integrase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  158 bits (400), Expect = 1e-43
 Identities = 94/295 (31%), Positives = 164/295 (55%), Gaps = 7/295 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSW---LSE 68
           ++ F   + +E+  + +T+ SY  DL +   ++ Q  Y +   + A     +SW   L +
Sbjct: 1   MDLFFKYLQYEKRYSPHTLTSYHTDLGQFAAYL-QQVYDITDAAEADHTIIRSWILTLVQ 59

Query: 69  QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128
            N KP S  R ++ +R  +++L  ++    +P   + +PK   +LP  + E     LL +
Sbjct: 60  NNIKPRSINRKIACLRSYYRFLLAQERVKVNPMLRIKAPKATKKLPAFVQEEPFNNLLDS 119

Query: 129 PDPQSPLE-LRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187
              +   E  RD+  LE LY TG+R+ EL+++   ++  R   VRV+GKG KER+VP+ +
Sbjct: 120 FSFEDTFEGQRDRLTLEFLYGTGIRLAELINIEPSDIEERAKTVRVLGKGNKERIVPLND 179

Query: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSP 247
           + +  ++ +  + +S  LG+  S  +  +++G+ +  +  +  +K Y  +     E  SP
Sbjct: 180 SLLLALDAYKTE-KSHFLGDNNSVKLLVTNKGRPLYPKFVYRVVKKYISLITTS-EHNSP 237

Query: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           HVLRH+FATHLLN GADL  ++ LLGH+ L+ TQ+YTH   E+LK +  + HP+A
Sbjct: 238 HVLRHSFATHLLNKGADLNAIKDLLGHASLAATQVYTHNTIEQLKSIFEKAHPKA 292