Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., tyrosine recombinase XerC from Magnetospirillum magneticum AMB-1

 Score =  139 bits (350), Expect = 8e-38
 Identities = 97/300 (32%), Positives = 163/300 (54%), Gaps = 14/300 (4%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQN---QYRLDFISFAGLQEYQSWLSE 68
           VE +   +  ER  + +T+  Y  DL+  L ++ ++   +  L  ++  G  +++++L+ 
Sbjct: 18  VESWWQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGAGDFRAFLAR 77

Query: 69  QNYKP---TSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLS-EAQVEA 124
           +       +S AR++S +R  F++L R  +  +     + SP+ P  +PK L+ +  +EA
Sbjct: 78  RTQDGLGRSSLARLMSTLRGFFKFLDRHDLVHNPALKAVKSPRPPKSVPKPLAPDEALEA 137

Query: 125 LLSAPDPQSP--LELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERL 182
           L SA +      L  RD A+  LLY  GLR+ E +SLT  ++     +V + GKG K+R+
Sbjct: 138 LSSAGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDLPKGDTMV-ITGKGNKQRV 196

Query: 183 VPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDV 242
           VP+     + I  +L++   L    + +D +F  +RG  +       +++    + G+  
Sbjct: 197 VPVLPVVRDAIADYLKR---LPYPAEPTDPIFLGARGGPLNPGVVQRQMRRLRQMMGLP- 252

Query: 243 EKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           E  +PH LRH+FATHLL  G DLR +Q LLGHS LSTTQ YT V   RL +++ + HPRA
Sbjct: 253 ETATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHPRA 312