Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., site-specific tyrosine recombinase XerD from Magnetospirillum magneticum AMB-1

 Score =  186 bits (472), Expect = 6e-52
 Identities = 114/296 (38%), Positives = 173/296 (58%), Gaps = 8/296 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
           +E FL+ M  ERG + NT+ +Y  DL+   E++    +         +  Y +  +E   
Sbjct: 9   IESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQAEIGM 68

Query: 72  KPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP 131
              ++AR LS +++ + ++  E++R DDP+A + +P+L   LPK L   +V ALL   D 
Sbjct: 69  AARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALL---DA 125

Query: 132 QSPLELRD----KAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187
              LE  D     A+LE LYA GLRV+ELVSL +  ++    V+ V GKG KER+VP+ +
Sbjct: 126 ARALEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLSD 185

Query: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQ-QMTRQTFWHRIKHYAVIAGIDVEKLS 246
            A   +  +  + ++L+   + S  +FPSS     +TR  F   +   AV+AG+D  K+S
Sbjct: 186 PARAALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKVS 245

Query: 247 PHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           PHVLRH+FA+HLL  GADLR VQ +LGH+D++TT+IYTH+  +   +L   HHP A
Sbjct: 246 PHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHPLA 301