Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., site-specific tyrosine recombinase XerC (NCBI) from Escherichia coli BW25113

 Score =  175 bits (444), Expect = 1e-48
 Identities = 110/302 (36%), Positives = 170/302 (56%), Gaps = 26/302 (8%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSW--LSEQ 69
           VE++L  +  ER L+  T+ +Y+  L  ++ + ++N          GLQ +Q       +
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN----------GLQSWQQCDVTMVR 57

Query: 70  NYKPTSK---------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEA 120
           N+   S+         A  LSA+R  F +L  +     +P+  + +PK P  LPK++   
Sbjct: 58  NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117

Query: 121 QVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180
            +  LL   D   PL +RD+AMLE++Y  GLR++ELV L ++++ L  G V VMGKG KE
Sbjct: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176

Query: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240
           R +P+G NA+ WIE +L   R L   E   D +F S  G++++ +    R   + +  G+
Sbjct: 177 RRLPIGRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGL 233

Query: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300
           +   + PH LRH+FATH+L    DLR VQ LLGH++LSTTQIYTH+  + L  +++  HP
Sbjct: 234 N-NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292

Query: 301 RA 302
           RA
Sbjct: 293 RA 294