Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., tyrosine recombinase XerC from Enterobacter asburiae PDN3

 Score =  179 bits (455), Expect = 5e-50
 Identities = 108/292 (36%), Positives = 169/292 (57%), Gaps = 6/292 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRL-DFISFAGLQEYQSWLSEQN 70
           V +FL  +  ER L+  T+ +Y+  L  +++   +   +       A ++ +     ++N
Sbjct: 10  VSRFLRYLGVERQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKN 69

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
             P S A  LSA+R  F +L  +     +P+  + +PK P  LPK++    V  LL   D
Sbjct: 70  LSPASLALRLSALRSFFDWLVSQGALKANPAKGIATPKAPRHLPKNIDVDDVNRLLDI-D 128

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
              PL +RD+AMLE++Y  GLR++ELV+L ++++ L  G V VMGKG KER +P+G NA+
Sbjct: 129 LNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 188

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
            WIE +L   R L   E+  D +F S  G++++ +    R   + +  G++   + PH L
Sbjct: 189 SWIEHWLDL-RGLFGSEE--DALFLSKLGKRISARNVQKRFAEWGIKQGLN-SHVHPHKL 244

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           RH+FATH+L    DLR VQ LLGH++LSTTQIYTH+  + L  +++  HPRA
Sbjct: 245 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 296