Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., tyrosine recombinase XerD from Enterobacter asburiae PDN3

 Score =  416 bits (1069), Expect = e-121
 Identities = 209/301 (69%), Positives = 245/301 (81%), Gaps = 6/301 (1%)

Query: 5   LSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQS 64
           +  D  L+EQFLD +W E+ LAENT+++YR DL+ L+EW+A     L   + A   + Q+
Sbjct: 1   MEKDLALIEQFLDALWLEKNLAENTLSAYRRDLTMLVEWLAHRGLSL---ASAQRDDLQA 57

Query: 65  WLSEQ---NYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQ 121
            L E+    YK TS AR+LSA+RRLFQ+L+REK+R DDPSALL SPKLP RLPKDLSEAQ
Sbjct: 58  LLGERIAGGYKATSSARLLSAMRRLFQHLYREKIREDDPSALLASPKLPQRLPKDLSEAQ 117

Query: 122 VEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKER 181
           VE LL +P    PLELRDKAMLELLYATGLRV+ELV LTM ++SLRQGVVRV+GKG KER
Sbjct: 118 VERLLQSPAVDLPLELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKER 177

Query: 182 LVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGID 241
           LVP+GE A+ W+ET+L+ GR  LL   + D++FPS R QQMTRQTFWHRIKHYA +AGID
Sbjct: 178 LVPLGEEAVYWLETYLEHGRPWLLNGTSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGID 237

Query: 242 VEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
            EKLSPHVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+QLH +HHPR
Sbjct: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297

Query: 302 A 302
           A
Sbjct: 298 A 298