Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., tyrosine recombinase XerC from Escherichia coli ECRC101

 Score =  176 bits (446), Expect = 6e-49
 Identities = 106/292 (36%), Positives = 167/292 (57%), Gaps = 6/292 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYR-LDFISFAGLQEYQSWLSEQN 70
           VE++L  +  ER L+  T+ +Y+  L  ++ + ++N  +       A ++ +      + 
Sbjct: 8   VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
               S A  LSA+R  F +L  +     +P+  + +PK P  LPK++    +  LL   D
Sbjct: 68  LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDI-D 126

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
              PL +RD+AMLE++Y  GLR++ELV L ++++ L  G V VMGKG KER +P+G NA+
Sbjct: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAL 186

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
            WIE +L   R L   E   D +F S  G++++ +    R   + +  G++   + PH L
Sbjct: 187 SWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLN-NHVHPHKL 242

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           RH+FATH+L    DLR VQ LLGH++LSTTQIYTH+  + L  +++  HPRA
Sbjct: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294