Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., site-specific tyrosine recombinase XerC from Dickeya dianthicola ME23

 Score =  142 bits (357), Expect = 2e-38
 Identities = 97/290 (33%), Positives = 159/290 (54%), Gaps = 13/290 (4%)

Query: 22  ERGLAENTVASYRNDLSKLLEWMAQN--QYRLDFISFAGLQEYQSWLSEQ---NYKPTSK 76
           ER  +E T+ +  +   + + W A+    Y  D I+   L+ YQ  L +    N +P S 
Sbjct: 44  ERNWSETTLKTQTHHQYRFILWAAERGLHYGRD-ITLPILEHYQRHLYQYRKPNGEPLST 102

Query: 77  ARMLSAIRRL---FQYLHREKVRADDPSALLVSPKLPTRLPKD-LSEAQVEALLSAPDPQ 132
               S +  L   F ++ R  +   DP++ LV P+L  RLP+  LS A VE +L+ PD  
Sbjct: 103 RTQRSQLGPLVVWFGWMTRHHLLLADPASGLVLPRLEKRLPRHILSVADVEQVLALPDLT 162

Query: 133 SPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVM-GKGGKERLVPMGENAIE 191
           +   +RD+A++ELL++TG+R  E+  L + ++   + +V ++ GKG K+R++P+G+ A+ 
Sbjct: 163 TLQGIRDRALMELLWSTGIRRGEVAVLEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALR 222

Query: 192 WIETFLQQGRSLLLGEQTSDIVFPSSRGQQ-MTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
           W+  +LQ  R  LL       +F +  G + +T       + HY   +GI  +  S H+ 
Sbjct: 223 WLAYYLQAVRPQLLVNPHCPALFVALDGVEGLTPNGITSLVSHYIKASGI-AKWGSCHLF 281

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300
           RHA AT +L  GADLR +Q +LGH+ + +TQIYT V+   L+ +H   HP
Sbjct: 282 RHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHP 331