Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  412 bits (1059), Expect = e-120
 Identities = 207/298 (69%), Positives = 237/298 (79%)

Query: 5   LSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQS 64
           +  D   +EQFLD +W E+ LAENT+ +YR DLS ++EW+      L       LQ   +
Sbjct: 1   MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60

Query: 65  WLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEA 124
              E  YK TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLP RLPKDLSEAQVE 
Sbjct: 61  ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120

Query: 125 LLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVP 184
           LL AP    PLELRDKAMLE+LYATGLRV+ELV LTM ++SLRQGVVRV+GKG KERLVP
Sbjct: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180

Query: 185 MGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEK 244
           +GE A+ W+ET+L+ GR  LL   + D++FPS R QQMTRQTFWHRIKHYAV+AGID EK
Sbjct: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240

Query: 245 LSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           LSPHVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+QLH +HHPRA
Sbjct: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298