Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score =  217 bits (552), Expect = 3e-61
 Identities = 130/316 (41%), Positives = 187/316 (59%), Gaps = 22/316 (6%)

Query: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67
           D   +E FL+ M  ERG A NT++SY +DL+ L E++ +    L       L  Y + L+
Sbjct: 10  DGARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLA 69

Query: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127
            Q +  TS+AR LS++R+ +++L+ E +R DDP+ ++ +P+    LPK +S A V  LL 
Sbjct: 70  AQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLG 129

Query: 128 APDPQSPLE-------LRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180
               ++  E       +R   +LELLYATG+RV+ELVSL ++ +      + + GKG K+
Sbjct: 130 LAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKD 189

Query: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQT-------------SDIVFPS-SRGQQMTRQT 226
           R+V +   AIE +E + + GR  L  E++             S  +FPS S+   + RQ 
Sbjct: 190 RMVLLSRAAIEAMEKY-EAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQV 248

Query: 227 FWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHV 286
           F   +K  A+ AG+    +SPHVLRHAFA+HLL  GADLR VQ LLGHSD+STTQIYTHV
Sbjct: 249 FARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHV 308

Query: 287 ATERLKQLHNEHHPRA 302
             ERL++L   HHP A
Sbjct: 309 LEERLQELVQTHHPLA 324