Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., Single-stranded-DNA-specific exonuclease RecJ from Xanthobacter sp. DMC5

 Score =  258 bits (659), Expect = 5e-73
 Identities = 164/443 (37%), Positives = 248/443 (55%), Gaps = 11/443 (2%)

Query: 57  AVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSP 116
           AV  L  A+   +++ V GD+D DGA S+AL V  L+  G  +  + +P+R  +GYG + 
Sbjct: 85  AVARLARAVTTGEQVAVFGDYDVDGACSTALMVGVLQA-GGLDPFFHIPDRIFEGYGPNV 143

Query: 117 EVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNL 176
             ++Q   RG  +++TVD G +SLE +  AK+ G+ VVV DHH  G+ LP   A+VNPN 
Sbjct: 144 PAIEQLAARGVTLLVTVDCGTTSLEPLAAAKRLGMDVVVIDHHQAGETLPPATAIVNPNR 203

Query: 177 QQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVP 236
           +        +   G+AF + + L   +RQ G F A+    P L+E +D+VAL TVADVVP
Sbjct: 204 EDDLSGLGHVCAAGLAFVVAVGLVRALRQSGHFNAE-RPAPDLLEALDIVALATVADVVP 262

Query: 237 LDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDD 296
           L   NR  V +GL  +R    R G+ AL++ A+ D         GF +GPRINA GR+ +
Sbjct: 263 LIGLNRAFVAKGLIAMRR-RTRIGLTALMDAARLDGPPR-PFHLGFLIGPRINAGGRIGE 320

Query: 297 MSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCE-RLQLSDDRELPYG 355
            + G  LLL  +   AR +A+ELD LN  R+E+E  +   A A     L +S++  +   
Sbjct: 321 ATLGARLLLTQDPAEARGIAAELDRLNAERQEVERAILAAAEAEAHAALGISEEGAV--- 377

Query: 356 LVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDT 415
           +V+    WH GV+G++A+R+KE++ RP  A A  G+    GS RS+PG+ +  A+     
Sbjct: 378 VVVSGEGWHPGVVGLVAARLKERFQRPAFAIAFNGETG-TGSGRSIPGVDIGRAVR--GA 434

Query: 416 QNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEF 475
              G+++K GGHAMAAGLT+E +         +Q +  +++ A  +G +  DG L     
Sbjct: 435 VESGLLVKGGGHAMAAGLTVERRQLGALRAELEQRLAPDVERARAEGTLSIDGALTARGA 494

Query: 476 SLHTAELLRAGGPWGQAFPEPLF 498
           +L   E +   GP+G   PEP+F
Sbjct: 495 TLDLVETVSRAGPFGAGNPEPVF 517