Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

 Score =  469 bits (1208), Expect = e-136
 Identities = 264/568 (46%), Positives = 365/568 (64%), Gaps = 23/568 (4%)

Query: 19  IDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFD 78
           + PLL RL+ +RGV    +L+     L S   L G   A  LL  AIA+ KR+ +V D+D
Sbjct: 21  VHPLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVADYD 80

Query: 79  ADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVS 138
            DGAT+ A+ V  LR+LG++NV YLVP+R  DGYGL+P + ++    GA+M++TVDNG++
Sbjct: 81  CDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNGIA 140

Query: 139 SLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMA 198
           S+EGV  AK +GLQV+VTDHHLPG ELP  D +VNPN   C F SK++AGVGV FY+++A
Sbjct: 141 SVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVLLA 200

Query: 199 LCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGLAR 258
           L   +R++G F      +PKL  L+ LVALGTVADVV LD NNR LV QGL+RIRAG   
Sbjct: 201 LRSELRKRGVF--DTATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGAMP 258

Query: 259 PGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARRMASE 318
            G+ AL + A R A      DFGFALGPRINAAGRL DM+ G+E LL ++   A  +A  
Sbjct: 259 AGVAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELARM 318

Query: 319 LDGLNQTRKEIEEGMKQEAVAFCERL-QLSDDRE----LPYGLVLFQRDWHQGVIGILAS 373
           LDG+N+ R++IE GM+ +A+   E L     D E     P  + +F   +H+GV+GI+AS
Sbjct: 319 LDGINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIVAS 378

Query: 374 RIKEKYHRPVIAFAEGG----DGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAM 429
           RIK+++HRP   FA  G    + +LKGS RS+PG H+RDALD +  ++PG++L+FGGHAM
Sbjct: 379 RIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAM 438

Query: 430 AAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPW 489
           AAG T+  ++FE F + F Q+ RE L +AAL   I +DG +  E   +   + L     W
Sbjct: 439 AAGCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLHR-EVW 497

Query: 490 GQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASV 549
           GQ F  P F  E +V+ Q+LVGEKHL L L   ++G P    ID + F+       +   
Sbjct: 498 GQGFAPPTFSEEVEVVSQRLVGEKHLSLKLR--HQGQP----IDAMWFS-----HTEPLP 546

Query: 550 KTVRLAYKLDINEFRGNQSLQLMIDHLE 577
             V+LA++LD +E++G + L+ +++  E
Sbjct: 547 PRVKLAFRLDADEWQGVRRLRFLVEGAE 574