Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. OAS795

 Score =  471 bits (1211), Expect = e-137
 Identities = 264/566 (46%), Positives = 360/566 (63%), Gaps = 21/566 (3%)

Query: 19  IDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFD 78
           + PLL RL+ +RGV    +L+     L     LHG   A  LL  A+A+ KR+ +V D+D
Sbjct: 21  VHPLLARLFAARGVLAKDELDDGLARLLPPDTLHGTREAAVLLADAMAQHKRLCIVADYD 80

Query: 79  ADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVS 138
            DGAT+ A++V  LR+LG+RNV YLVP+R  DGYGL+P + ++  + GA+M++TVDNG++
Sbjct: 81  CDGATACAVAVRGLRLLGARNVSYLVPDRVVDGYGLTPPIAERVADSGADMLITVDNGIA 140

Query: 139 SLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMA 198
           S+EGV  AK +GLQV+VTDHHLPG ELP  D +VNPN   C F SK++AGVGV FY+++A
Sbjct: 141 SVEGVAAAKARGLQVLVTDHHLPGPELPAADVLVNPNQPGCGFESKSIAGVGVMFYVLLA 200

Query: 199 LCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGLAR 258
           L   +R +G F      +PKL  L+ LVALGTVADVV LD NNR LV QGL+RIRAG   
Sbjct: 201 LRSELRARGTFTPAS--QPKLDVLLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGALP 258

Query: 259 PGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARRMASE 318
            GI AL + A R+A      DFGFALGPRINAAGRL DM+ G+E LL ++   A  +A  
Sbjct: 259 AGIAALFKAAGRNAAVATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRADELARM 318

Query: 319 LDGLNQTRKEIEEGMKQEAVAFCERL---QLSDDRELPYGLVLFQRDWHQGVIGILASRI 375
           LDG+N+ R++IE GM+ +A+   E L           P  + +F  D+H+GV+GI+ASRI
Sbjct: 319 LDGINRERRDIEGGMRDQALLLAESLFGPTAEGGEAPPAAISVFDADFHEGVVGIVASRI 378

Query: 376 KEKYHRPVIAF-AEGGDGK---LKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAA 431
           K+++HRP   F A G  GK   LKGS RS+PG H+RDALD +  ++PG++L+FGGHAMAA
Sbjct: 379 KDRFHRPAFVFAASGAPGKAHELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAMAA 438

Query: 432 GLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQ 491
           G T+    FE F +   ++  E LD A L   + +DG L  E   +   + L     WGQ
Sbjct: 439 GCTVARDKFEVFEQALAEVAHEWLDAATLTRRLDTDGPLAREYMRIDLVDTLHR-EVWGQ 497

Query: 492 AFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASVKT 551
            F  P F  E +V+ Q+LVGEKHL L L   ++G P    +DGI F        D     
Sbjct: 498 GFAPPTFSEEVEVVSQRLVGEKHLALKLR--HQGQP----VDGIWFG-----HTDPLPAR 546

Query: 552 VRLAYKLDINEFRGNQSLQLMIDHLE 577
           V LA++LD +E++G + ++ +++  E
Sbjct: 547 VTLAFRLDADEWQGVRRVRFLVEGAE 572