Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  666 bits (1718), Expect = 0.0
 Identities = 333/578 (57%), Positives = 438/578 (75%), Gaps = 9/578 (1%)

Query: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61
           + I+ RP P       ++ PLL RLY +RGV + A+L+K+   L  ++QL GI+  V+LL
Sbjct: 1   MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLL 60

Query: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121
             AI +++RI++VGDFDADGAT+S + VL LR+LG+ +VDYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181
           A++R  ++++TVDNG+SS++GV  AK  GL+V+VTDHHLPG++LP+ DA++NPN   C+F
Sbjct: 121 ALQRQPQLLITVDNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPGCSF 180

Query: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241
           PSK+LAGVGV FY++MAL   +R  G + AQ   +P + EL+DLVALG+VADVVPLD NN
Sbjct: 181 PSKSLAGVGVIFYVLMALRARLRSLGRYEAQ--PQPNIGELLDLVALGSVADVVPLDANN 238

Query: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301
           RILVHQGL+RIRAG ARPG++A++EVA+RD RR+ + D GF LGPR+NAAGRLDDMS G+
Sbjct: 239 RILVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGI 298

Query: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361
           E LLC +   A+ MA +LD LNQ RK IE+GM++EA+A  + L +     +PYGL LF  
Sbjct: 299 ECLLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPV---ESMPYGLCLFDA 355

Query: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421
           DWHQGVIGILASR+KE+YHRP IAFA+ GDG LKGS RSVPG H+RDALD +  ++P +I
Sbjct: 356 DWHQGVIGILASRLKERYHRPTIAFADAGDGMLKGSARSVPGFHIRDALDAVAARHPQLI 415

Query: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481
            KFGGHAMAAGL++ E NF  F   FD+ VR +L E  L G +LSDG L  EEF L  A+
Sbjct: 416 SKFGGHAMAAGLSLPEANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAK 475

Query: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541
            LR  GPWGQ FPEPLF G F+++ Q++VGE+HLK++L    K    +V +DGIAF +D 
Sbjct: 476 ALRHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVL----KSECGSVRLDGIAFGIDR 531

Query: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579
             WP+ +V+ V LAYKLD+NEFRGN+S+QLMI H+E +
Sbjct: 532 EVWPNPTVRWVELAYKLDVNEFRGNESVQLMIAHMEPR 569