Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Paraburkholderia sabiae LMG 24235

 Score =  471 bits (1212), Expect = e-137
 Identities = 278/586 (47%), Positives = 369/586 (62%), Gaps = 32/586 (5%)

Query: 1   MIEIQRRP--EPDLSLLPDH-IDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRA 57
           M +I  RP    D   L  H + P+L RLY SRGV    ++E     L     L G D A
Sbjct: 1   MTQIVTRPCSPADAEALIRHGLHPVLARLYASRGVCLPDEIETGLARLTPPASLKGCDAA 60

Query: 58  VELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPE 117
             LL  AI  ++R++VV D+D DGAT+ A++V  LRM G++ +DYLVPNRFE GYGL+PE
Sbjct: 61  AVLLADAIEGKRRMLVVADYDCDGATACAVAVRGLRMFGAQ-IDYLVPNRFEYGYGLTPE 119

Query: 118 VVDQAIERGA---EMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNP 174
           +V  A +R     ++++TVDNG++S++GV  A   G+ V+VTDHHLPG ELP   A+VNP
Sbjct: 120 IVALAAQRPGGKPDLLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDELPAARAIVNP 179

Query: 175 NLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADV 234
           N   C+FPSK +AGVGV FY+++AL   +R++G F      EP+L  L+DLVALGTVADV
Sbjct: 180 NQPGCSFPSKCIAGVGVMFYVLLALRAELRKRGAFG-DTRPEPRLDGLLDLVALGTVADV 238

Query: 235 VPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRL 294
           V LD NNR+LV QGLQRIR G  +PGI AL   A RDAR     D GFALGPR+NAAGRL
Sbjct: 239 VKLDGNNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARSASGFDLGFALGPRLNAAGRL 298

Query: 295 DDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPY 354
            DMS G++ L  ++I  A  +A +LD +N+ R+EIE GM+Q+A+   E L   D    P 
Sbjct: 299 SDMSLGIDCLTTDDIGRAWELAQQLDTMNRERREIEAGMQQQAL---EDLSGVD----PA 351

Query: 355 G---LVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDG--KLKGSCRSVPGLHMRDA 409
           G   + LF   WHQGVIGI+A R+KEK+HRP   FA   D    +KGS RS+PG H+RDA
Sbjct: 352 GSTTITLFNPTWHQGVIGIVAGRLKEKFHRPSFTFALADDSGHTVKGSGRSIPGFHLRDA 411

Query: 410 LDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGE 469
           LD +  + PG+I KFGGHAMAAGLTI   +  RF   F+++ RE L +  L   + +DG+
Sbjct: 412 LDLVSKREPGLIAKFGGHAMAAGLTIATDDLPRFTAAFERVGREWLTQDVLARTVETDGD 471

Query: 470 LKPEEFSLHTAELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTN 529
           L+   F+    E++ A   WGQ FP P+F GEF V+ Q LV +KHLKL L    + F   
Sbjct: 472 LEDAYFTPQFVEMIDA-AVWGQGFPAPVFSGEFDVMSQALVKDKHLKLQLMRGRQRF--- 527

Query: 530 VMIDGIAFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDH 575
              + I FN           +TV +AY+L  + + G   +QL+++H
Sbjct: 528 ---NAIWFN----HTEPLPARTV-VAYRLSADTWNGVSRVQLIVEH 565