Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., single-stranded-DNA-specific exonuclease RecJ from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  277 bits (708), Expect = 9e-79
 Identities = 178/539 (33%), Positives = 287/539 (53%), Gaps = 29/539 (5%)

Query: 45  LHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLV 104
           LH    +  +D+AV  L  A+   ++I+V GD+D DG TS AL    LR   S N+D+ +
Sbjct: 55  LHDPFLMKDMDQAVNRLNNALHSNEKILVYGDYDVDGTTSVALMYGFLRNYTS-NIDFYI 113

Query: 105 PNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQE 164
           P+R+++GYG+S + +D A E G  +I+++D G+ S + V YA +KG+  ++ DHHLP ++
Sbjct: 114 PDRYKEGYGVSSQGIDWAAENGFTLIISLDCGIKSADKVAYASEKGIDFIICDHHLPDED 173

Query: 165 LPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELID 224
           +P+  A+++P    C +P K L+G GV F L+ A C+            + + +  +L+D
Sbjct: 174 IPQAVAVLDPKRVDCPYPYKELSGCGVGFKLLQAFCIQ---------NNIEQEEAYKLLD 224

Query: 225 LVALGTVADVVPLDDNNRILVHQGLQRIRAGL-ARPGIQALIEVAK-RDARRLVAADFGF 282
           L+ +   AD+VP+   NRIL + GLQ +      RPG+ AL E+A  R    + +  FGF
Sbjct: 225 LLVVSIAADIVPITGENRILAYFGLQHLNGPQPMRPGLDALKELADIRSEMDITSIVFGF 284

Query: 283 ALGPRINAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCE 342
           A  PRINAAGR+ D    V +LL      A +MA  ++  N+ R+  +  + +EA+   E
Sbjct: 285 A--PRINAAGRMGDAKNSVRMLLAQTKEEAFKMADIINESNKERRSKDTNITKEALQMIE 342

Query: 343 RLQLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVP 402
           +    +        VLF+  WH+GVIGI+ASR  E Y+RP I   +  +GK  GS RSV 
Sbjct: 343 Q---DEFLRTANSTVLFKETWHKGVIGIVASRCIEHYYRPTIILTQ-SNGKASGSARSVH 398

Query: 403 GLHMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKG 462
           G ++  A++        ++ +FGGH  AAGLT+  +N   F   F+++V + + E     
Sbjct: 399 GFNVHSAIESCS----DLLEQFGGHMYAAGLTLPVENVPAFIERFERVVTDTITEEQKIP 454

Query: 463 IILSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLFDGE--FKVLHQKLVGEKHLKLMLE 520
            I  D  +  ++ + +   ++R   P+G     P+F  E  +     ++VG+ HLKL L 
Sbjct: 455 QIEIDAPINLKQITRNFYNIIRQMEPFGPGNMRPVFVSECVYDTGSVRVVGDSHLKLRL- 513

Query: 521 PLYKGFPTNVMIDGIAFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579
               GF +   ID I F +       +      + Y ++ N +RG  +LQL I  +  K
Sbjct: 514 -TQDGFTS---IDAIGFGLGDYYKAISKGIPFDVCYTVEENIYRGVITLQLRIKDIRIK 568