Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., single-stranded-DNA-specific exonuclease RecJ from Pectobacterium carotovorum WPP14

 Score =  692 bits (1787), Expect = 0.0
 Identities = 356/581 (61%), Positives = 446/581 (76%), Gaps = 10/581 (1%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           +++RRP  +   LPD + PLLRRLY  RGV    +LE++   L +++ L GID+A++LL 
Sbjct: 6   QLRRRPLAEDIDLPDTVPPLLRRLYAQRGVKGAQELERSLSGLLNYRLLSGIDKAIDLLQ 65

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
             +AE++ I++VGDFDADGATS+AL+VLALR +G  NV YLVPNRFE+GYGLSPEVV QA
Sbjct: 66  HTLAEKRCIVIVGDFDADGATSTALTVLALRSMGGVNVKYLVPNRFENGYGLSPEVVAQA 125

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
              GAE+I+TVDNG+SS  GV  A ++G+ V+VTDHHLPG+ LP  DAM+NPNL  C FP
Sbjct: 126 AALGAEVIVTVDNGISSHAGVEDAHRRGIAVLVTDHHLPGEILPAADAMINPNLPDCQFP 185

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGW-----FAAQGMVEPKLMELIDLVALGTVADVVPL 237
           SKALAGVGVAFYLMMAL V +R   W     F  QG+ +P L EL+DLVALGTVADVVPL
Sbjct: 186 SKALAGVGVAFYLMMALFVRLRDSDWFTQPFFTQQGLAKPNLTELLDLVALGTVADVVPL 245

Query: 238 DDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDM 297
           D NNRILV QGL RIRAG  RPGI+AL+EVA RDA +LV++D GFA+GPR+NAAGRLDDM
Sbjct: 246 DANNRILVAQGLNRIRAGECRPGIRALLEVANRDASQLVSSDLGFAIGPRLNAAGRLDDM 305

Query: 298 SFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLV 357
           + GVELLL N+I  AR +A++LD LNQ R+EIE+GM+ EA+  CE L+ +   ELPYGL 
Sbjct: 306 TVGVELLLSNDITQARMLANDLDALNQDRREIEQGMQVEALRLCESLERT-RTELPYGLA 364

Query: 358 LFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQN 417
           ++  +WHQGV+GILASRIKE++HRPVIAFA  GDG LKGS RS+ GLH+RDAL+++DT  
Sbjct: 365 MYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGMLKGSGRSISGLHLRDALERLDTLY 424

Query: 418 PGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELK-PEEFS 476
           PG++ KFGGHAMAAGL++ E  F+ F + F +LV E LD + L+G++ SDGEL  PE   
Sbjct: 425 PGMMDKFGGHAMAAGLSLHEDRFDDFRQRFGELVGEWLDPSQLEGVVWSDGELALPELDL 484

Query: 477 LHTAELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNV-MIDGI 535
           L TAE+LR  GPWGQAFPEP FDG F++L  +L+ E+HLK M EP+  G    V ++DGI
Sbjct: 485 LSTAEMLRYAGPWGQAFPEPTFDGCFRILQPRLLKERHLKAMFEPI--GATGAVPLLDGI 542

Query: 536 AFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
           AFNVD   WPD S+K V + Y+LDINEFRG +S+QLMI HL
Sbjct: 543 AFNVDTTIWPDPSIKEVEMVYRLDINEFRGKRSVQLMIQHL 583