Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

 Score =  271 bits (693), Expect = 5e-77
 Identities = 190/529 (35%), Positives = 281/529 (53%), Gaps = 23/529 (4%)

Query: 51  LHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFED 110
           L G+D+AVE L AA+   + I + GD+D DGATSSAL   AL  +G++   Y +P+R ++
Sbjct: 81  LKGMDKAVERLVAAVTRGETIGIFGDYDVDGATSSALLRNALADMGAKARVY-IPDRIKE 139

Query: 111 GYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDA 170
           GYG +   + +  + G  +++TVD G ++ + +  A + GL ++V DHH+    LP   A
Sbjct: 140 GYGPNAPALLRLRDEGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHHVGEAALPAALA 199

Query: 171 MVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGT 230
           ++NPN      P   LA VGVAF L + L   ++  GW+  Q    P LM  +DLVALGT
Sbjct: 200 VINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWY--QSRPAPDLMRWLDLVALGT 257

Query: 231 VADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINA 290
           V DVVPL   NR LV QGL ++ A  A  G+ AL +VA     R  +   G+ LGPR+NA
Sbjct: 258 VCDVVPLVGVNRALVVQGL-KVMAKRANVGLAALADVA-GVKERPDSYTLGYVLGPRVNA 315

Query: 291 AGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDR 350
            GR+ +   G  L+  +N   A  +A +LDG N+ R+EIE  +  +A+   E+++   D 
Sbjct: 316 GGRVGEAELGTRLMSTDNPAEAAEIARQLDGYNKDRQEIEAVVLLDAI---EQVETRPDD 372

Query: 351 ELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDAL 410
             P  LV    +WH GVIGI+A R+KE+Y R     A  GD + KGS RSVPGL +  A+
Sbjct: 373 GRPL-LVAAGENWHPGVIGIVAGRLKERYGRVACVVALEGD-QGKGSGRSVPGLDLGSAI 430

Query: 411 DKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGEL 470
             I  +  G++   GGHAMAAG T+             + ++ +L E  L  ++  DG L
Sbjct: 431 --IAARQAGLLRAGGGHAMAAGFTVARDKLTALSDFLAERLQAQL-EGDLVPLLELDGAL 487

Query: 471 KPEEFSLHTAELLRAGGPWGQAFPEPLFD-GEFKVLHQKLVGEKHLKLMLEPLYKGFPTN 529
                 +   E L   GP+G   PEP F     ++    +VG  H++L+L          
Sbjct: 488 DAGAAGIELVETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTG-----AGG 542

Query: 530 VMIDGIAFNVDLRRWPDASVKTV----RLAYKLDINEFRGNQSLQLMID 574
             +  IAF         A + +      LA  L ++ ++GN S+QL++D
Sbjct: 543 KRLKAIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVD 591