Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  721 bits (1862), Expect = 0.0
 Identities = 358/574 (62%), Positives = 450/574 (78%), Gaps = 5/574 (0%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           +++RR   + + LP  + PLLRRLY SRGV +  +LE++ K +  ++QL GID AVE+L+
Sbjct: 6   QLRRREADETAELPADLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILY 65

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
            A  E  RIIVVGDFDADGATS+ALSVL +R LG  N+ YLVPNRFEDGYGLSPEVVDQA
Sbjct: 66  NAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQA 125

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
             RGA++I+TVDNG+SS  GV +AK  G+ V+VTDHHLPG  LP+ +A++NPNL+ C FP
Sbjct: 126 KARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFP 185

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242
           SK+LAGVGVAFYLM+AL   +R +GWF  + +  P L EL+DLVALGTVADVVPLD NNR
Sbjct: 186 SKSLAGVGVAFYLMLALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNR 245

Query: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302
           IL  QGL RIRAG  RPGI+AL+E++ RD ++L A+D GFALGPR+NAAGRLDDMS GV 
Sbjct: 246 ILTWQGLSRIRAGKCRPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVA 305

Query: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362
           LLLC+N+  AR +ASELD LNQTRKEIE+GM+ EA+  CE+L+ S +  LP GL ++  +
Sbjct: 306 LLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSE-TLPGGLAMYHPE 364

Query: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422
           WHQGV+GILASRIKE++HRPVIAFA  GDG LKGS RS+ GLHMRDAL+++DT  P +++
Sbjct: 365 WHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMI 424

Query: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482
           KFGGHAMAAGL++EE  FE+F + F +LV E LD A L+G ++SDG L   E S+  A+L
Sbjct: 425 KFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQL 484

Query: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542
           LR  GPWGQ FPEPLFDG F++L Q+LVGE+HLK+M+EP+  G     ++DGIAFN+D  
Sbjct: 485 LRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGG----PLLDGIAFNIDTT 540

Query: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
            WPD  V+ V LAYKLDINEFRGN+SLQ++ID +
Sbjct: 541 CWPDNGVREVELAYKLDINEFRGNRSLQIIIDDI 574