Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

 Score =  730 bits (1885), Expect = 0.0
 Identities = 363/575 (63%), Positives = 457/575 (79%), Gaps = 5/575 (0%)

Query: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61
           I+++RR   + + LP  + PLLRRLY SRGV +  +LE++ K +  ++QL G+++AVE+L
Sbjct: 5   IQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEIL 64

Query: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121
           + A  E  RIIVVGDFDADGATS+ALSVLA+R LG  N+DYLVPNRFEDGYGLSPEVVDQ
Sbjct: 65  YNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQ 124

Query: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181
           A  RGA++I+TVDNG+SS  GV +A+  G+ V+VTDHHLPG  LP  +A++NPNL+ C F
Sbjct: 125 AHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNF 184

Query: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241
           PSK+LAGVGVAFYLM+AL   +R QGWF  + +  P L EL+DLVALGTVADVVPLD NN
Sbjct: 185 PSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANN 244

Query: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301
           RIL  QG+ RIRAG  RPGI+AL+EVA RDA++L A+D GFALGPR+NAAGRLDDMS GV
Sbjct: 245 RILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGV 304

Query: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361
            LLLC+NI  AR +A+ELD LNQTRKEIE+GM+ EA+  CE+L+ S D  LP GL ++  
Sbjct: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRD-TLPGGLAMYHP 363

Query: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421
           +WHQGV+GILASRIKE++HRPVIAFA  GDG LKGS RS+ GLHMRDAL+++DT  PG++
Sbjct: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMM 423

Query: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481
           LKFGGHAMAAGL++EE  F+ F + F +LV E LD + L+G ++SDG L P E ++  A+
Sbjct: 424 LKFGGHAMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQ 483

Query: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541
           LLR  GPWGQ FPEPLFDG F++L Q+LVGE+HLK+M+EP+  G     ++DGIAFNVD 
Sbjct: 484 LLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGG----PLLDGIAFNVDT 539

Query: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
             WPD  V+ V+LAYKLDINEFRGN+SLQ++ID++
Sbjct: 540 ALWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNI 574