Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., single-stranded-DNA-specific exonuclease RecJ from Erwinia tracheiphila SCR3

 Score =  712 bits (1839), Expect = 0.0
 Identities = 366/574 (63%), Positives = 447/574 (77%), Gaps = 10/574 (1%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           E++RR   +  LL D + PLLRRLY  RGV    +L++  + LH F  L GI RA ++L 
Sbjct: 6   ELRRREAAETCLLSDDLHPLLRRLYHFRGVQQKEELDRGVRNLHGFHTLDGIQRAADILH 65

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
            AI     I++VGDFDADGATS+AL+VLALR +G R+V YLVPNRFEDGYGLSPEVV+QA
Sbjct: 66  QAIVNHSCIMIVGDFDADGATSTALTVLALRSMGGRHVSYLVPNRFEDGYGLSPEVVEQA 125

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
             RGA++I+TVDNG+SS  GV  A +KG+ VV+TDHHLPG+ LP+ DA+VNPNL+ CAFP
Sbjct: 126 AARGAQLIVTVDNGISSHAGVSLAHEKGIAVVITDHHLPGETLPDADAIVNPNLEGCAFP 185

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242
           S++LAGVGVAFYLM+AL   +R  G  A      P L EL+DLVALGTVADVVPLD NNR
Sbjct: 186 SRSLAGVGVAFYLMLALRATLRDSGVDAL-----PNLAELLDLVALGTVADVVPLDMNNR 240

Query: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302
           ILV QGL RIRAG  R GI+AL+EVA RDAR+L A D GFALGPR+NAAGRLDDMS GV 
Sbjct: 241 ILVWQGLNRIRAGKCRVGIRALLEVANRDARQLAANDLGFALGPRLNAAGRLDDMSVGVA 300

Query: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362
           LLL  +   AR +A+ELD LNQTRKEIE+GM+ +A+AFCERL+ S +  LP G+ ++  +
Sbjct: 301 LLLSEDQAQARMLAAELDSLNQTRKEIEQGMQVDALAFCERLEQSSE-ALPPGIAMYHPE 359

Query: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422
           WHQGV+GILASR+KE++HRPVIAFA  G G LKGS RS+ G HMRDAL+++DT +PG+IL
Sbjct: 360 WHQGVVGILASRLKERFHRPVIAFAPVGGGTLKGSGRSIVGFHMRDALERLDTLHPGLIL 419

Query: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482
           KFGGHAMAAGL+++  NFE F + F  LV E LD A+L+G+I SDGEL P+E +L  AEL
Sbjct: 420 KFGGHAMAAGLSLDASNFEVFRQHFSDLVGEWLDVASLQGVIWSDGELLPQELTLPMAEL 479

Query: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542
           LR  GPWGQAFPEP FDG+F ++ Q+LVGE+HLK+M+EPL  G     ++DGIAFNVD  
Sbjct: 480 LRDAGPWGQAFPEPQFDGKFMLIQQRLVGERHLKVMVEPLGGG----PLLDGIAFNVDTT 535

Query: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
           RWPD SVK V LAYKLDINEFRGN++LQL+IDHL
Sbjct: 536 RWPDPSVKQVELAYKLDINEFRGNRNLQLIIDHL 569