Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., single-stranded-DNA-specific exonuclease RecJ from Enterobacter asburiae PDN3

 Score =  723 bits (1866), Expect = 0.0
 Identities = 359/575 (62%), Positives = 454/575 (78%), Gaps = 5/575 (0%)

Query: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61
           I+++RR   +   LPD +  LL+RLY SRGV     LE++ K +  ++QL GI++A E+L
Sbjct: 5   IKLRRREAVEPVDLPDDLPALLKRLYASRGVRRAEDLERSVKGMLPWQQLSGIEKATEML 64

Query: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121
           + A+ E  RI+VVGDFDADGATS+ALSVL+LR LG  NV YLVPNRFEDGYGLSPEVVDQ
Sbjct: 65  YNALREGTRIVVVGDFDADGATSTALSVLSLRALGCDNVTYLVPNRFEDGYGLSPEVVDQ 124

Query: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181
           A  RGA+MIMTVDNG+SS  GV +A   G+ V+VTDHHLPG+ LP+ +A++NPNL+ C F
Sbjct: 125 AHARGAQMIMTVDNGISSHAGVDHAHALGIPVLVTDHHLPGETLPDAEAIINPNLRDCGF 184

Query: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241
           PSK+LAGVGVAFYLM+AL   +R +GWF ++G+  P L E +DLVALGTVADVVPLD NN
Sbjct: 185 PSKSLAGVGVAFYLMLALRTLLRDKGWFDSRGIAVPNLAEYLDLVALGTVADVVPLDTNN 244

Query: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301
           RIL  QGL RIRAG  RPGI+AL+E+A RD  +L A+D GFALGPR+NAAGRLDDMS GV
Sbjct: 245 RILTWQGLSRIRAGKCRPGIKALLEIANRDPLKLAASDLGFALGPRLNAAGRLDDMSVGV 304

Query: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361
            LLLC+NI  AR +A+ELD LNQTRKEIE+GM+ EA+  CE+L+ S D  LP GL ++  
Sbjct: 305 ALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSGD-TLPGGLAMYHP 363

Query: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421
           +WHQGV+GILASRIKE++HRPVIAFA  GDG LKGS RS+ GLHMRDAL+++DT  PG++
Sbjct: 364 EWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGLM 423

Query: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481
           +KFGGHAMAAGL++EE  F+ F RLF +LV + +D A L+G ++SDGEL P E ++  A+
Sbjct: 424 IKFGGHAMAAGLSLEEAKFDEFQRLFGELVTDWIDPALLQGEVVSDGELSPLEMTMDVAQ 483

Query: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541
           +LR  GPWGQ FPEPLFDG F++L Q++VGE+HLK+M+EP+  G     ++DGIAFNVD 
Sbjct: 484 MLRDAGPWGQMFPEPLFDGRFRLLQQRIVGERHLKVMVEPVGGG----PLLDGIAFNVDT 539

Query: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
             WPD  V+ V LAYKLDINEFRGN++LQ++ID++
Sbjct: 540 AVWPDNGVREVELAYKLDINEFRGNRTLQIIIDNI 574