Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 589 a.a., single-stranded-DNA-specific exonuclease RecJ from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  284 bits (726), Expect = 8e-81
 Identities = 191/590 (32%), Positives = 308/590 (52%), Gaps = 56/590 (9%)

Query: 18  HIDPLLRRLYLSRGVSNVAQLEKAAKA----LHSFKQLHGIDRAVELLFAAIAEQKRIIV 73
           +++P L  L  +R V++  + +   +     +HS   +  +D+AV+ L  AI ++++I+V
Sbjct: 24  NVNPTLANLLANRKVTSFQEAKDFFRPDLDKIHSPFLMKDMDKAVDRLVQAIEQEEKILV 83

Query: 74  VGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTV 133
            GD+D DG T+ AL    L  +   +VD+ +P+R+++GYG+S   V  A E G  +I+++
Sbjct: 84  YGDYDVDGTTAVALFYGFLSSVYP-HVDFYIPDRYQEGYGVSERGVRYAAENGFRLIVSL 142

Query: 134 DNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAF 193
           D G+ ++E V  A   G+  ++ DHH PG ELP   A+++P  + C +P K L+G GV F
Sbjct: 143 DCGIKAIEKVALANSLGVDFIICDHHTPGDELPHALAVLDPKRKDCTYPYKELSGCGVGF 202

Query: 194 YLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIR 253
            L+         Q +    G     L  L+DLVA+   AD+VP+   NRIL H GL+R+ 
Sbjct: 203 KLI---------QAFTEKTGKNASHLFGLLDLVAVSIAADIVPITGENRILAHYGLERLN 253

Query: 254 AGLARPGIQALIEVAK----------------------RDARRLVAADFGFALGPRINAA 291
               RPG+ ALI   K                      +  + +  +D  F +GPRINA+
Sbjct: 254 NN-PRPGLMALILAGKGQRSLQELLENRQLLQREMLQLKSDKDIDISDIVFRIGPRINAS 312

Query: 292 GRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRE 351
           GRL+     VELL+  +IH A R A  ++ +N  RK  +E + +EA+      Q+ +DRE
Sbjct: 313 GRLEHAKASVELLISQDIHDALRRAEVVEDVNAARKNFDENITKEAI------QMIEDRE 366

Query: 352 --LPY-GLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRD 408
              PY   VL++ DWH+GVIGI+ASR  E+Y+RP I   E  + K  GS RSV    + +
Sbjct: 367 QDKPYKSTVLYKEDWHKGVIGIVASRCIEQYYRPTIILTE-SNNKATGSARSVYDFDIYE 425

Query: 409 ALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDG 468
           A+ +       ++ +FGGH  AAGLT+E      F   F+++V   + +   K ++  D 
Sbjct: 426 AISECS----DLLEQFGGHKYAAGLTMELDKVPAFQARFEEVVTRRIADIHTKPVLEVDD 481

Query: 469 ELKPEEFSLHTAELLRAGGPWGQAFPEPLF-DGEFKVLHQKLVGEKHLKLMLEPLYKGFP 527
           EL+ ++ +     +LR   P+G    EP+F   +    + K++ +KHLK   E +  G  
Sbjct: 482 ELELDQINYKFYNILRQMAPFGPGNTEPIFCANQVYAQNIKVLKDKHLK--FEIVQDGQV 539

Query: 528 TNVMIDGIAFNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577
           T+ +   IAF          S     +A+++  N FR   SLQL +  ++
Sbjct: 540 TSPVC--IAFGFATYYEMLRSKMRFNIAFEVRENTFRNTSSLQLYVKDIK 587