Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., single-stranded-DNA-specific exonuclease RecJ from Bacteroides ovatus ATCC 8483

 Score =  272 bits (695), Expect = 3e-77
 Identities = 173/562 (30%), Positives = 299/562 (53%), Gaps = 32/562 (5%)

Query: 19  IDPLLRRLYLSRGVSNVAQLEKAAKA----LHSFKQLHGIDRAVELLFAAIAEQKRIIVV 74
           I P+L +L + RG++  A  +K  +     LH    +  +D AVE L  A+ +++RI++ 
Sbjct: 43  ISPILGQLLVQRGITKAADAKKFFRPQLPDLHDPFLMKDMDIAVERLNRAMGKKERILIY 102

Query: 75  GDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134
           GD+D DG T+ AL    ++   S N+DY +P+R+ +GYG+S + VD A E G  +I+ +D
Sbjct: 103 GDYDVDGTTAVALVYKFIQQFYS-NLDYYIPDRYNEGYGISKKGVDYAAETGVGLIIVLD 161

Query: 135 NGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194
            G+ ++E + YAK+KG+  ++ DHH+P   LP   A++N       +P   L+G GV F 
Sbjct: 162 CGIKAVEEITYAKEKGIDFIICDHHVPDDVLPPAVAILNAKRLDNTYPYTHLSGCGVGFK 221

Query: 195 LMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 254
            M A  +         + G+    L+ L+D+VA+   +D+VP+   NRIL + GL+++ +
Sbjct: 222 FMQAFAI---------SNGIEFHHLIPLLDIVAVSIASDIVPIMGENRILAYHGLKQLNS 272

Query: 255 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 314
                G++A+I+V     + +  +D  F +GPRINA+GR+ +    V+LL   +   A  
Sbjct: 273 N-PSIGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQNGKEAVDLLTEKDFSIALE 331

Query: 315 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 374
            A +++  N+TRK++++ M +EA      L+   DR     +VL+  +WH+GVIGI+ASR
Sbjct: 332 KAGQINQYNETRKDLDKSMTEEANNIVANLEGLADRR---SIVLYNEEWHKGVIGIVASR 388

Query: 375 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434
           + E Y+RP +      D    GS RSV G  +  A++        ++  FGGH  AAGL+
Sbjct: 389 LTEVYYRPAVVLTR-TDDMATGSARSVSGFDVYKAIEHC----RDLLENFGGHTYAAGLS 443

Query: 435 IEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAFP 494
           ++ +N + F + F++ V + +       +I  D E+   + S      L+   P+G    
Sbjct: 444 MKVENVDAFTKRFEEYVSQHILPEQTSAVIEIDAEIDFRDISSKFFNDLKKFNPFGPDNT 503

Query: 495 EPLF--DGEFKVLHQKLVG--EKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASVK 550
           +P+F     +     K+VG  ++H+KL L        +N +++GIAF          + +
Sbjct: 504 KPIFCTHHVYDYGTSKVVGRDQEHIKLEL----VDNKSNNVMNGIAFGQSSHVRYIKTKR 559

Query: 551 TVRLAYKLDINEF-RGNQSLQL 571
           +  + Y ++ N   RG   LQ+
Sbjct: 560 SFDICYTIEENTHKRGEVQLQI 581