Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., Ribosomal RNA small subunit methyltransferase H from Xanthobacter sp. DMC5

 Score =  221 bits (563), Expect = 2e-62
 Identities = 142/316 (44%), Positives = 189/316 (59%), Gaps = 21/316 (6%)

Query: 6   QHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQ 65
           +H+ V+L E +  LA K  G Y+DGTFG GG++  IL     + R+ +IDRDP AIA  Q
Sbjct: 18  RHLPVMLREVLAHLAPKDAGHYVDGTFGAGGYTSAILG--AADCRVLAIDRDPTAIAAGQ 75

Query: 66  KIDDP---RFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDG 122
            + +    R  +VH  FS + E A   D +  +DGV+ D+GVSS QLD+A+RGFSF +DG
Sbjct: 76  TLVEASGQRLLLVHDRFSRLDEIAAEQDFL-PLDGVVLDIGVSSMQLDEADRGFSFRRDG 134

Query: 123 PLDMRMDPTSGMPVSAWLAQADLDDI--TWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           PLDMRM    G  +SA    A LDD+    +I  FGE++H+R IAKAIV+ RE     P+
Sbjct: 135 PLDMRM---GGDGLSAADLCATLDDVRLAHIIWTFGEERHSRAIAKAIVKAREEA---PI 188

Query: 181 TRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRL 240
           TRT+QLA+++S        E  HPATR FQA RI +N EL E+  AL  A   L P GRL
Sbjct: 189 TRTAQLAEIVSRVVWAKPGEM-HPATRTFQALRIAVNEELSELVEALAAAERALRPGGRL 247

Query: 241 SVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGK-ALKPSDQEV 299
            V++FHSLEDR+VK F+   ++ P      P  +           + V K A++P   EV
Sbjct: 248 VVVTFHSLEDRIVKTFLSHRAKAPSASRHQPQAEGP-----EPSFRLVAKGAVEPGPDEV 302

Query: 300 ELNPRSRSSVLRVAEK 315
             NPRSRS+ LR AE+
Sbjct: 303 AGNPRSRSAKLRAAER 318