Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  299 bits (765), Expect = 7e-86
 Identities = 163/319 (51%), Positives = 227/319 (71%), Gaps = 14/319 (4%)

Query: 3   ASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62
           + F HI+VLL+E++E LA++ DG Y+DGTFGRGGHSR IL+QLGP+G+L   D+DPQAIA
Sbjct: 5   SGFNHITVLLDEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGKLLGFDKDPQAIA 64

Query: 63  EAQKI--DDPRFTIVHGPFSGI-AEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFM 119
             Q +  +D RF +V   F+ + AE A+R  + GKV GVL DLGVSSPQLDD ERGFSFM
Sbjct: 65  TGQALAAEDGRFVVVQRSFAELGAEVAER-GMAGKVAGVLLDLGVSSPQLDDPERGFSFM 123

Query: 120 KDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEP 179
            DGPLDMRMDPT G+  + ++A A +++I  V +E+GE++ A R+A+A+VE RE    +P
Sbjct: 124 NDGPLDMRMDPTRGVSAAQFIATAPVEEIARVFKEYGEERFAGRMARAVVERRE---IQP 180

Query: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
             RT+ LA+++  A P ++++ K+PATRAFQ  RI++N+EL +++  L  A + L   GR
Sbjct: 181 FERTADLAEVLKVANP-AWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALEALEVGGR 239

Query: 240 LSVISFHSLEDRMVKRFMRK--ESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQ 297
           L VISFHSLEDR+VK FMR+  + +   +P  +P+  +        K+K  GKA   S+ 
Sbjct: 240 LVVISFHSLEDRIVKLFMRRLVKGESDNLPRNLPVRFEAF----VPKIKIHGKAQFASEA 295

Query: 298 EVELNPRSRSSVLRVAEKL 316
           E++ NPRSRS+V+RVAEKL
Sbjct: 296 ELKANPRSRSAVMRVAEKL 314