Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Sphingobium sp. HT1-2

 Score =  220 bits (561), Expect = 3e-62
 Identities = 134/308 (43%), Positives = 186/308 (60%), Gaps = 15/308 (4%)

Query: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66
           HI VLL E ++ LAI P   ++DGTFG GG+S  + A      ++++ DRDP AI E Q 
Sbjct: 6   HIPVLLTEVLDALAITPGERHVDGTFGAGGYSSAMAAA---GAQVFAFDRDPDAIREGQA 62

Query: 67  IDDPR-FTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGPLD 125
           + D +  T++ G FS + E       V  V G+  D+GVSS QLD  ERGFSF  DGPLD
Sbjct: 63  LADEKGITLIPGEFSRMEELLAERG-VSSVSGITLDIGVSSMQLDRPERGFSFQADGPLD 121

Query: 126 MRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRTSQ 185
           M M    GM  + +L  A  +DI  VI  +GE+  +RR+A+AIV+ R      PL RT Q
Sbjct: 122 MTMSQ-GGMSAADFLNTAAEEDIADVIYRYGEEPRSRRVARAIVDAR------PLERTGQ 174

Query: 186 LAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVISF 245
           LA ++  A      +KK P+TR FQA RI++N ELEE++ AL  A  +L P GRL++++F
Sbjct: 175 LAAVVRRALGYKPHDKKDPSTRTFQAIRIHVNRELEELERALEAAEALLEPGGRLAIVTF 234

Query: 246 HSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELNPRS 305
           HSLEDR+VK+F+RK S G +      L +   +A  +   +   KA+KP + E+  NPR+
Sbjct: 235 HSLEDRIVKQFLRKRS-GSEAGGSRHLPEK--KAEVAPAFEKPAKAVKPGETELARNPRA 291

Query: 306 RSSVLRVA 313
           RS+ LR A
Sbjct: 292 RSATLRSA 299