Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., Ribosomal RNA small subunit methyltransferase H from Pseudomonas putida KT2440

 Score =  303 bits (776), Expect = 4e-87
 Identities = 161/318 (50%), Positives = 224/318 (70%), Gaps = 12/318 (3%)

Query: 3   ASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62
           + F HI+VLL+E++E LA++ DG Y+DGTFGRGGHSR IL++LGP+GRL   D+DPQAIA
Sbjct: 5   SGFNHITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIA 64

Query: 63  EAQKI--DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
             Q +  +D RF IV   F+ +        L GKV GVL DLGVSSPQLDD ERGFSF+ 
Sbjct: 65  TGQALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLN 124

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRM+P  G+  + ++A A +++I  V +E+GE++ A R+A+A+VE RE    +P 
Sbjct: 125 DGPLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERRE---KQPF 181

Query: 181 TRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRL 240
           TRT+ LA+++  A P ++++ K+PATRAFQ  RI++N+EL +++  L  A D L   GRL
Sbjct: 182 TRTADLAEVLKVANP-AWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRL 240

Query: 241 SVISFHSLEDRMVKRFMRK--ESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQE 298
           +VISFHSLEDR+VK FMRK  + +   +P  +P+       +   K+K +GKA   S+ E
Sbjct: 241 AVISFHSLEDRIVKLFMRKLVKGEADNLPRNLPVQ----HKVFEPKIKLIGKAQFASEAE 296

Query: 299 VELNPRSRSSVLRVAEKL 316
           ++ NPRSRS+V+RVAEKL
Sbjct: 297 LKANPRSRSAVMRVAEKL 314