Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  217 bits (552), Expect = 3e-61
 Identities = 133/309 (43%), Positives = 187/309 (60%), Gaps = 13/309 (4%)

Query: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66
           H  VLL ES+E LAIKP+G+Y+D TFG GGHS  IL +L   G+LYS D+D  A  ++Q+
Sbjct: 4   HRPVLLEESVEALAIKPEGVYVDVTFGGGGHSARILQEL-TSGKLYSFDQDSDAQEQSQR 62

Query: 67  IDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGPLDM 126
           ++ P F  V   F  + +Y + Y  V KVDG+L DLGVSS Q +  ERGFS   DGPLDM
Sbjct: 63  LEGPTFQFVRANFRDLKKYLRLYG-VKKVDGILADLGVSSHQFNVPERGFSTRFDGPLDM 121

Query: 127 RMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRTSQL 186
           RM+  +G+     L     + +  +   +GE K+A+ +A+ +VE R     +P    ++ 
Sbjct: 122 RMNSDAGITAREVLETYSEEQLHRIFGIYGEVKNAKTLARTVVEKRN---RQPFESIAEF 178

Query: 187 AKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVISFH 246
            + IS   PK  KE K+ A + FQA RI +N E++ ++  L  A+++L P GRLSVIS+H
Sbjct: 179 KQAISSCTPKG-KENKYLA-QVFQALRIEVNDEMKALEEMLEQAAEVLKPGGRLSVISYH 236

Query: 247 SLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELNPRSR 306
           SLEDRMVK F+ K     +V     L  ++I+ L +   K +     PSD+E+  N RSR
Sbjct: 237 SLEDRMVKNFIAKGKFFGEVEK--DLFGNEIKPLEAVYRKPI----TPSDEELLQNSRSR 290

Query: 307 SSVLRVAEK 315
           S+ LRVAEK
Sbjct: 291 SAKLRVAEK 299