Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., rRNA small subunit methyltransferase H from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  276 bits (707), Expect = 3e-79
 Identities = 156/315 (49%), Positives = 209/315 (66%), Gaps = 17/315 (5%)

Query: 3   ASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62
           +++ H +VLLNE+++ L I PDG Y+D TFGRGGHSR IL QL  +GRL   D+DPQA+ 
Sbjct: 4   SAWNHQTVLLNEAVQALDINPDGHYVDATFGRGGHSRLILEQLSRKGRLTVFDKDPQAVQ 63

Query: 63  EAQKI--DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
            A+++   D RF+I H  F  + E           DG+L DLGVSSPQ+DD ERGFSF  
Sbjct: 64  AAKELAASDGRFSIRHEGFCHLGELG-----AASADGLLMDLGVSSPQIDDPERGFSFRH 118

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRMD T G  V+ WL  A++  ++ VIR++GE++ A+ IAKAI   R+     P 
Sbjct: 119 DGPLDMRMDTTRGQSVAQWLETAEVSTLSEVIRDYGEERFAQSIAKAIDRRRQE--RGPF 176

Query: 181 TRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRL 240
             TS+LA++++ A  K+ +  K PATR FQAFRI+IN+ELEE+  AL  +  +L P G+L
Sbjct: 177 RTTSELAEVVAGAV-KTREPGKDPATRTFQAFRIFINAELEELQQALEASLQVLRPGGKL 235

Query: 241 SVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVE 300
            VISFHSLEDRMVK+FM + S+   V   +P  +    AL      T  K + PSD+EV+
Sbjct: 236 VVISFHSLEDRMVKQFMARHSRA-VVDRRVPFAEPAPMAL------TGLKRVMPSDEEVK 288

Query: 301 LNPRSRSSVLRVAEK 315
            NPRSRS+V+RVAE+
Sbjct: 289 GNPRSRSAVMRVAER 303