Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ribosomal RNA small subunit methyltransferase H from Magnetospirillum magneticum AMB-1

 Score =  218 bits (554), Expect = 2e-61
 Identities = 133/313 (42%), Positives = 190/313 (60%), Gaps = 14/313 (4%)

Query: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66
           HI VLL E I  LA + DG+Y+DGTFG GG+SR ILA      R+++IDRDP A+A  + 
Sbjct: 6   HIPVLLAEVIAALAPRNDGVYLDGTFGAGGYSRAILA--ASACRVWAIDRDPTAVARGKL 63

Query: 67  IDDP---RFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGP 123
           +++    RF+++ G F G  +   R   V +VDG+  D+GVSS Q+D  ERGFSF KDGP
Sbjct: 64  LEEGSAGRFSMIEGRF-GDMDSLLRQQGVNQVDGIALDIGVSSMQIDQPERGFSFAKDGP 122

Query: 124 LDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRT 183
           LDMRM+ T G   +  +      ++  +I  +GE++ +RR+AKAIVE R  +  E   RT
Sbjct: 123 LDMRME-TKGPSAADMVNDTPETELANIIYRYGEERLSRRVAKAIVEARRLKRFE---RT 178

Query: 184 SQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVI 243
            +LA+++    P+S  +   PATR FQA RI +N EL E++  L  A  +LAP G L+V+
Sbjct: 179 GELAEVVRKVVPRS-GDGIDPATRTFQALRIAVNDELGELERGLEAAERLLAPGGHLAVV 237

Query: 244 SFHSLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELN 302
           +FHSLEDR+VK F++  S +  +    +P  Q    A   A +    KA+ P+  E   N
Sbjct: 238 TFHSLEDRVVKSFLKARSGEAARPSRHVPQAQGSGPAASFALLSR--KAIGPAPDEARAN 295

Query: 303 PRSRSSVLRVAEK 315
           PR+RS+ LR A +
Sbjct: 296 PRARSAKLRAAAR 308