Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., rRNA small subunit methyltransferase H from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  400 bits (1027), Expect = e-116
 Identities = 198/316 (62%), Positives = 257/316 (81%), Gaps = 7/316 (2%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M  +F+H +VLL+E++ GL I+PDGIYIDGTFGRGGHSR IL+QLG EGRL +IDRDPQA
Sbjct: 1   MMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQA 60

Query: 61  IAEAQKIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
           IA AQ I+DPRF+I+HGPFS +A+Y    +L GK+DG+L DLGVSSPQLDDAERGFSFM+
Sbjct: 61  IAVAQTINDPRFSIIHGPFSALADYVAERELTGKIDGILLDLGVSSPQLDDAERGFSFMR 120

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRMDPT G   + WL  A+  DI WV++ FGE++ A+RIA+AIVE R  E  +P+
Sbjct: 121 DGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERFAKRIARAIVE-RNRE--QPM 177

Query: 181 TRTSQLAKLISDAAPKSFKEK-KHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
           TRT +LA++++ A P   K+K KHPATR FQA RI++NSELEEI+ AL+ +  +LAP GR
Sbjct: 178 TRTKELAEVVAAATP--VKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGR 235

Query: 240 LSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEV 299
           LS+ISFHSLEDR+VKRFMR++S+GPQVP G+P+T+ Q++ LG  +++ +GK L P ++EV
Sbjct: 236 LSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRELRALGK-LMPGEKEV 294

Query: 300 ELNPRSRSSVLRVAEK 315
             NPR+RSSVLR+AE+
Sbjct: 295 AENPRARSSVLRIAER 310