Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase from Enterobacter asburiae PDN3

 Score =  406 bits (1044), Expect = e-118
 Identities = 203/315 (64%), Positives = 255/315 (80%), Gaps = 5/315 (1%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M  +++H +VLL+E++ GL I+PDGIYIDGTFGRGGHSR IL+QLG EGRL +IDRDPQA
Sbjct: 1   MMENYKHKTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQA 60

Query: 61  IAEAQKIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
           IA AQ I+DPRF+IVHGPFS +AEY     L GK+DG+L DLGVSSPQLDDAERGFSFM+
Sbjct: 61  IAVAQTINDPRFSIVHGPFSALAEYVAERGLTGKIDGILLDLGVSSPQLDDAERGFSFMR 120

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRMDPT G   + WL  AD  DI WVI+ FGE++  +RIA+AIVE   N + EP+
Sbjct: 121 DGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVE--RNRI-EPM 177

Query: 181 TRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRL 240
           TRT +LA++I+ A P   K  KHPATR FQA RI++NSELEEI+ AL+ + D+LAP GRL
Sbjct: 178 TRTKELAEVIAAATPVKDKH-KHPATRTFQAVRIWVNSELEEIELALKSSLDVLAPGGRL 236

Query: 241 SVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVE 300
           S+ISFHSLEDR+VKRFMR++S+GPQVP G+P+T++Q+R LG  +++ +GK L P ++EV 
Sbjct: 237 SIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLRKLGGRQLRALGK-LMPGEEEVA 295

Query: 301 LNPRSRSSVLRVAEK 315
            NPR+RSSVLRVAE+
Sbjct: 296 ENPRARSSVLRVAER 310