Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH from Dickeya dianthicola ME23

 Score =  402 bits (1034), Expect = e-117
 Identities = 205/317 (64%), Positives = 254/317 (80%), Gaps = 7/317 (2%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M  +F+H +VLL+E++ GL I+ +GIYIDGTFGRGGHSR IL++LGPEGRL +IDRDPQA
Sbjct: 1   MAETFKHTTVLLDEAVNGLNIRSNGIYIDGTFGRGGHSRLILSRLGPEGRLLAIDRDPQA 60

Query: 61  IAEAQKIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
           +A A  IDD RF+I+HGPFS +AEY     L GK+DG+L DLGVSSPQLDD ERGFSFM+
Sbjct: 61  VAVANTIDDARFSIIHGPFSELAEYVDERGLSGKIDGILLDLGVSSPQLDDPERGFSFMR 120

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRMDPT G   + WL  A+ +DI WV++ FGE++ A+RIA+AIVE   N + +PL
Sbjct: 121 DGPLDMRMDPTRGQSAAEWLMNAEAEDIAWVLKTFGEERFAKRIARAIVE--RNRI-DPL 177

Query: 181 TRTSQLAKLISDAAPKSFKEK-KHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
           TRT  LA+LI+ A+P   +EK KHPATR+FQA RIYINSELEEI+ AL GA  +LAP+GR
Sbjct: 178 TRTKALAELIAAASP--IREKYKHPATRSFQAIRIYINSELEEIERALDGALQVLAPEGR 235

Query: 240 LSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEV 299
           LSVISFHSLEDR+VKRF+R  S+GPQVP G+PLT++Q+R+ G   +K+VGK + P D EV
Sbjct: 236 LSVISFHSLEDRIVKRFIRHHSRGPQVPAGLPLTEEQLRSRGGQTLKSVGK-MMPPDDEV 294

Query: 300 ELNPRSRSSVLRVAEKL 316
             NPR+RSSVLR AEKL
Sbjct: 295 ADNPRARSSVLRFAEKL 311