Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Ribosomal RNA small subunit methyltransferase H from Alteromonas macleodii MIT1002

 Score =  368 bits (944), Expect = e-106
 Identities = 193/316 (61%), Positives = 240/316 (75%), Gaps = 9/316 (2%)

Query: 3   ASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62
           + F+HISVLL+E IE LAIKP+GIYID TFGRGGHS  IL  LG  GRL + DRDPQAI 
Sbjct: 5   SEFKHISVLLDECIEALAIKPNGIYIDATFGRGGHSAHILDALGEHGRLIAFDRDPQAIK 64

Query: 63  EAQKI-DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKD 121
            A++  DD RF+I+H PF  +AE  +   L GK+DGVL DLGVSSPQLDDAERGFSF++D
Sbjct: 65  AAERFADDKRFSIIHSPFGDMAEEIEALGLTGKIDGVLMDLGVSSPQLDDAERGFSFLRD 124

Query: 122 GPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLT 181
           GPLDMRMD + G   + WLA A+  DIT VI+EFGE+K  +RIA AIV  R+     P+T
Sbjct: 125 GPLDMRMDTSRGQSAADWLANAEEQDITQVIKEFGEEKFGKRIAHAIVNTRK---ETPIT 181

Query: 182 RTSQLAKLISDAAPKSFKEK-KHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRL 240
           RT+QLAK+I +A P   K+K KHPATRAFQ  RIYIN+ELE++   L+ A+ +LA +GRL
Sbjct: 182 RTAQLAKIIDEAVP--VKDKFKHPATRAFQGIRIYINAELEQLRVGLKAATQVLAKEGRL 239

Query: 241 SVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVE 300
           +VISFHSLEDR+VKRF++ +S+G  VPH +P+TQ +I A     +K +GKA+KPS+QE+ 
Sbjct: 240 AVISFHSLEDRLVKRFIKDQSKGKSVPHNLPITQAEIDA--DKVLKALGKAIKPSEQEIA 297

Query: 301 LNPRSRSSVLRVAEKL 316
            N RSRSSVLRVAEKL
Sbjct: 298 NNVRSRSSVLRVAEKL 313