Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., S-adenosyl methionine-dependent methytransferase from Agrobacterium fabrum C58

 Score =  212 bits (539), Expect = 1e-59
 Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 20/310 (6%)

Query: 6   QHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQ 65
           +HI VLL E I  L   P  I +DGTFG GG+++ IL Q      + ++DRDP AIA  +
Sbjct: 18  RHIPVLLREVIAALEPAPGKIILDGTFGAGGYTQAILDQ---GANVIALDRDPTAIAGGE 74

Query: 66  KI---DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDG 122
            +   +  R +++   FS +A++A    L    DGV+ D+GVSS Q+D+AERGFSF K+G
Sbjct: 75  AMVVANGGRLSLIQSQFSDLAKHAPEDGL----DGVVLDIGVSSMQIDEAERGFSFQKNG 130

Query: 123 PLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTR 182
           PLDMRM   SG+  +  + +A + D+  +    GE+K   RIA+AI + R  E   P   
Sbjct: 131 PLDMRMS-ASGVSAADVVNRAKVGDLIRIFGFLGEEKQPGRIARAIEKKRAEE---PFRT 186

Query: 183 TSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSV 242
           T  LA LI    P+  K+K HPATR FQA R+++N EL E+  AL  A   L P GRL V
Sbjct: 187 TRDLAGLIEIVTPRKAKDKIHPATRVFQALRVFVNDELGELAQALFAAERSLKPGGRLVV 246

Query: 243 ISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGK-ALKPSDQEVEL 301
           ++FHSLEDR+VK+F    S        +P+ +D+      A  + +GK  +  SD+E EL
Sbjct: 247 VTFHSLEDRIVKKFFSDRSGKAAGSRHLPMVEDK-----PAIFENIGKPMIAASDEEAEL 301

Query: 302 NPRSRSSVLR 311
           NPR+RS+ LR
Sbjct: 302 NPRARSAKLR 311