Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., putative peptidoglycan D,D-transpeptidase FtsI from Xanthobacter sp. DMC5

 Score =  213 bits (542), Expect = 2e-59
 Identities = 160/551 (29%), Positives = 273/551 (49%), Gaps = 39/551 (7%)

Query: 37  VLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEA 96
           V+ AFC L   +A +Q+         G  R   +  + SAR  I DRNG+ +A+ V   +
Sbjct: 107 VMLAFCCLFVAIA-VQLSHLAMTADGGGGRGRGSDAVASARPDIIDRNGDIVAIDVKSPS 165

Query: 97  VWADPVAIYKEGGLVEKDRWYALADVL-GLDRQEMMKKIEDNRSRRFIYLQRQVSPAMAK 155
           ++A+P  +      +E      L  VL  LD +E  K++  N  + F +L+R+++PA  +
Sbjct: 166 LFAEPRRLIDPDEALE-----GLLKVLPDLDVEEARKRL--NSGKGFAWLKREITPAQMR 218

Query: 156 YIRELKLAGIGLKEESRRYYPAGEVSAHLVGVTGIDGHGLEGVERSFDSTLTGESGKSVT 215
            I  L   GIG  +E+RR YP G + +H++G   +D  G+ G+E+  DS    E      
Sbjct: 219 AIHRLGFPGIGFLKENRRIYPDGPIISHVMGGVNVDNQGISGIEKWIDSRGLAELH---- 274

Query: 216 RKDKFGRVVENIALEEREEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKT 275
                   +   A + ++E  P+QL++D R+Q      + +A   ++A  A AV+ +V T
Sbjct: 275 --------LAGFATDRQQE--PVQLSMDVRVQHAVRDELVKAKNKFQALHAMAVVTEVNT 324

Query: 276 GAVLAMVNAPSYNPNNRNDWQSFKMRNRVITDAFEPGSTVKPFVVLAALANGIADKNTII 335
           G ++++V+ P ++PN   + +     NR+ T  +E GST K      AL +G    N+  
Sbjct: 325 GEIISLVSIPDFDPNTSGNPKDDAYLNRLTTGVYEMGSTFKALSFAMALDSGKIGLNSTF 384

Query: 336 DTGDGTMQIGGSRVRDTSKVGKADLTL--ILKKSSNIGVAKLALEMPLEALLGMYSSVGL 393
           D   G +  G   + D     +  LT+  I   SSN+G AK+ L + +EA       +G 
Sbjct: 385 D-ARGALHFGKFAIHDYHAENRV-LTVPEIFLVSSNVGTAKMVLSLGVEAHKAFLKKMGQ 442

Query: 394 GEMSGLDLVGETIGIFPNRRRWSQFEIATLSFGYGLAITPIQLAHAYATLGNHGKYQPIH 453
            +    +L   +  I P  +RW +   AT++FG+GL++ P+Q   A  ++ N G   P  
Sbjct: 443 LDRLKTELPESSEPIVP--KRWGELNSATIAFGHGLSVAPLQAVMAVNSMVNGGFLIPPT 500

Query: 454 IIKGDQHGETR---QVVDPKYVNQVLEMLETVTQPGGTATRAAVPGYRIAAKSGTSRKAI 510
            IK       +   +V+ P+  +  +  +  +    GTAT+A VPG+ +  K+GT+ K +
Sbjct: 501 FIKRTPEEAQKVAVRVLKPE-TSDKMRYIMRLNAEKGTATKAEVPGFLVGGKTGTAEKVV 559

Query: 511 AGGYS-DEYFAYTAGVAPVSDPRISLVVMVNEPQGDS-YYGGAVAG----PVFSEIMKGA 564
            G Y+ ++       V P+  PR  ++VM++EP+  S  YG A +G    P   +I++  
Sbjct: 560 NGRYAKNKLLTSFTAVFPMDKPRYLVLVMLDEPKATSETYGFATSGWNAAPTAGKIVERI 619

Query: 565 LQILNIAPDEN 575
             +LNIAP +N
Sbjct: 620 APMLNIAPRQN 630