Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., penicillin-binding protein 2 from Pseudomonas simiae WCS417

 Score =  159 bits (403), Expect = 2e-43
 Identities = 167/620 (26%), Positives = 271/620 (43%), Gaps = 95/620 (15%)

Query: 15  RVTTAEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQ 74
           R+   E     +R R       V+     L+AR+ ++Q+I+ D      +   +  + + 
Sbjct: 6   RIKDHEKDARLVRSRVVFGAIMVVALLGVLIARLYFLQVIQYDYHSTLSENNRVHVQPIP 65

Query: 75  SARGIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVL-------GLDR 127
             RG+I DRNG  +A + P     +  +++ +E        W  + DV+         DR
Sbjct: 66  PTRGLIFDRNGVVVADNRP-----SFSLSMTRE----RSGDWQQILDVIVEVLQLTPEDR 116

Query: 128 QEMMKKIEDNRSRRF----IYLQRQVSPAMAKYIRELKLAGIGLKEESRRYYPAGEVSAH 183
               K+++  R R F    I  +          + + +L G+ +  +  R+YP G   AH
Sbjct: 117 AIFEKRMKQGR-RPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGPHFAH 175

Query: 184 LVG-----------------VTGIDGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVEN 226
            VG                  +G    G  G+ER ++  L G+ G      +  GRV+  
Sbjct: 176 SVGYMGRINEKELKTLDPVNYSGTHHIGKTGIERFYEPELHGQVGYEEVETNARGRVLRV 235

Query: 227 IALEEREEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPS 286
           +   +   GK I L++D +LQ     A + A+   R    + V LD KTG VLAMV+ PS
Sbjct: 236 LKRTDPVPGKDIVLSLDIKLQ----EAAEMALGGRR---GAVVALDPKTGEVLAMVSQPS 288

Query: 287 YNPNNRNDWQSFK------------MRNRVITDAFEPGSTVKPFVVLAALANGIADKNT- 333
           ++PN      SFK            + NRV+   + PGST+KP V +A L  G+   ++ 
Sbjct: 289 FDPNLFVTGISFKAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDAGVVTASSR 348

Query: 334 IIDTGDGTMQIGGSRVRDTSKVGK--ADLTLILKKSSNIGVAKLALEMPLEALLGMYSSV 391
           + D G   +     + R+ ++ G    DL   + +S++     LA ++ ++ L       
Sbjct: 349 VFDPGYYMLPNYDHKYRNWNRTGDGYVDLDTAIMRSNDTYFYDLAHKLGIDRLSAYMGKF 408

Query: 392 GLGEMSGLDLVGETIGIFPNR------RRWSQFEIATLSFGYG---LAITPIQLAHAYAT 442
           GLG+   LD+  E+ G+ P+R      RR + F   TL  G G   +  TP+QLA A A 
Sbjct: 409 GLGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATAL 468

Query: 443 LGNHGKYQPIHI---IKGDQHGETRQVVD------PKYVNQVLEMLETVTQPGGTATRAA 493
           + N G +   H+   I+G++  +   + D        +      M + +    GTA +AA
Sbjct: 469 VANKGIWNRPHLAKTIEGEKPVDDNPIPDIVLRDASDWTKVNHGMQQVMHGARGTARKAA 528

Query: 494 VPG-YRIAAKSGTSRKAIAGGYSDEY-----------FAYTAGVAPVSDPRISLVVMVNE 541
           V   YRIA KSGT+ + +A    ++Y            A   G AP  DP+I + VMV  
Sbjct: 529 VGAQYRIAGKSGTA-QVVAIKQGEKYDRTKVQERHRDHALFVGFAPADDPKIVVAVMVE- 586

Query: 542 PQGDSYYGGAVAGPVFSEIM 561
             G+S  G  VA PV  ++M
Sbjct: 587 -NGES--GSGVAAPVVRQVM 603