Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

 Score =  173 bits (439), Expect = 2e-47
 Identities = 155/596 (26%), Positives = 265/596 (44%), Gaps = 93/596 (15%)

Query: 37  VLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEA 96
           VL AF  L AR+ Y+Q+   ++L ++ +        +   RG+I DRNG  LA +     
Sbjct: 25  VLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVPNRGLILDRNGIVLASNYSAYT 84

Query: 97  VWADPVAIYKEGGLVEK--DRWYALADVLGLDRQEMMKKIEDNRSRRFIYLQRQVSPA-M 153
           +   P  +    G VE+  D    + ++   DR+   +  ED+RS   I ++ ++S   +
Sbjct: 85  LEITPSKV----GDVEETIDSLTQVLEISPRDRRRFKRLREDSRSFDSIPIRTRLSDEEV 140

Query: 154 AKYIRE-LKLAGIGLKEESRRYYPAGEVSAHLVGVTG----------------------- 189
           A++  +  +  G+ +K    R YP GE+++H++G  G                       
Sbjct: 141 ARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQREKTAMEDWDEEEQANYKG 200

Query: 190 IDGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALEEREEGKPIQLTIDQRLQAI 249
            D  G  G+E+S++ TL G++G         GR V  +A      G  + L++D +LQ +
Sbjct: 201 TDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHPATPGNTVMLSLDIKLQKL 260

Query: 250 AFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPN------NRNDWQSFK---- 299
               V+    D R    + V +D KTG VLA V+ P+++PN      +   W +      
Sbjct: 261 ----VEDMFGDRRG---AVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDNESWAALTESID 313

Query: 300 --MRNRVITDAFEPGSTVKPFVVLAALANGIADKNTIIDTGDGTMQIGGSRVRDTS-KVG 356
             + NR +   + PGST KPF+ LAAL  G    + +++   G    GG R       +G
Sbjct: 314 KPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVND-PGYFNFGGHRFGSPEGNLG 372

Query: 357 KADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPN----- 411
             D+   ++ SSNI    LA EM ++ +      +G G+++G+DL GE  G+ P+     
Sbjct: 373 GVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGEVRGVLPSTEWKR 432

Query: 412 -------RRRWSQFEIATLSFGYGL-AITPIQLAHAYATLGNHGKYQPIHIIKGDQHGET 463
                   ++W   E  +L  G G    T +QLA A A + + G     H++   ++  +
Sbjct: 433 NAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHKPHLVLATRNTVS 492

Query: 464 RQVV------------DPKYVNQVLEMLETVTQPGGTATRAAVPGYRIAAKSGTSRKAIA 511
            QVV                ++ + E L +V   G      A   Y+ A K+GT+ +A+ 
Sbjct: 493 GQVVPMPQPPAENLGYTASAISVIREGLTSVVTSGTARGVFAGAAYQAAGKTGTA-QAVT 551

Query: 512 GGYSDEY-----------FAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPV 556
              + +Y            A   G APV+DP+I++ V+V     ++ +G   A P+
Sbjct: 552 QAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVE----NAGWGAGAAAPI 603