Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

 Score =  175 bits (444), Expect = 5e-48
 Identities = 164/601 (27%), Positives = 270/601 (44%), Gaps = 95/601 (15%)

Query: 37  VLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEA 96
           VL  F  + AR+A++Q++  + L    +        +   RG I DRNG  LA +    A
Sbjct: 25  VLFGFGLIGARLAFLQVVRHEELADRAESNRTAIVPIVPNRGQILDRNGVVLASNY---A 81

Query: 97  VWADPVAIYKEGGL-VEKDRWYALADVLGLDRQEMMKKIEDNRSRRFIYLQRQVSPA-MA 154
            +   +   K G L    D   A+ ++   DR+   +  ED+RS   I ++ ++S   +A
Sbjct: 82  AYTLEITPSKVGDLNAALDELDAIVEITPNDRRRFKRLREDSRSFDSIPIRTRLSDEEVA 141

Query: 155 KYIRE-LKLAGIGLKEESRRYYPAGEVSAHLVGVTG-----------------------I 190
           ++  +  +  GI +K    R YP GEV++H++G  G                        
Sbjct: 142 RFAAQRYRFPGIEIKARLFRSYPHGEVASHVIGYIGRINQREKTAMEDWDEEEQANYRGT 201

Query: 191 DGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALEEREEGKPIQLTIDQRLQAIA 250
           D  G  G+E+S++ TL G++G         GR V  +A      G  + L++D +LQ + 
Sbjct: 202 DYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLARHPATPGNTVMLSLDIKLQKL- 260

Query: 251 FRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPN------NRNDWQSF------ 298
              V+    + R    + V +D KTG +LA V+ P+++PN      +   W +       
Sbjct: 261 ---VEDMFGERRG---ALVAIDPKTGEILAFVSKPTFDPNLFVEGIDHESWAALIESIDK 314

Query: 299 KMRNRVITDAFEPGSTVKPFVVLAALANGI--ADKNTIIDTGDGTMQIGGSR-VRDTSKV 355
            + NR +   + PGST KPF+ LAAL  G   ADK   I+   G+   GG   +     +
Sbjct: 315 PLLNRALRGTYPPGSTYKPFMALAALETGARAADK---IENDPGSYSFGGRTFLSHRGGL 371

Query: 356 GKADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPNR--- 412
           G  D+   ++ SSN     LA EM ++ +    + +G G+ +G+DL+GE+ G+ P++   
Sbjct: 372 GGVDMHRAIQFSSNTYFYSLANEMGVDLIHEFMAPLGFGQFTGIDLLGESRGVLPSKAWK 431

Query: 413 ---------RRWSQFEIATLSFGYGL-AITPIQLAHAYATLGNHGKYQPIHIIKGDQHGE 462
                    + W   E  +L  G G  + T +QLA A ATL N G +   H+++  +   
Sbjct: 432 RAAYRRPDMKTWHAGETISLGIGQGYNSFTMLQLASANATLANGGMHYRPHLVRAIKDTV 491

Query: 463 TRQVV------------DPKYVNQVLEMLETVTQPGGTATRA-AVPGYRIAAKSGTSR-- 507
           T ++V              K+V+ V   +  VT+ GGT TR  A   Y  A K+GT++  
Sbjct: 492 TEEIVAQVQPQARDLGYAQKHVDVVRNAMVAVTK-GGTGTRVFAGAAYTSAGKTGTAQAV 550

Query: 508 ----KAIAGGYSDEY----FAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPVFSE 559
               KA A G + E      A     AP   P I++  +V     ++ +G A A P+   
Sbjct: 551 SLGPKARASGKALEERQRDHALYMAFAPAEAPTIAVAAIVE----NAGFGAAHAAPIVRR 606

Query: 560 I 560
           +
Sbjct: 607 V 607