Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  154 bits (390), Expect = 8e-42
 Identities = 164/597 (27%), Positives = 257/597 (43%), Gaps = 89/597 (14%)

Query: 40  AFCA-LVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEAVW 98
           + CA LV R+  +Q+++ D      +   +    +   RG+I DRNG  LA + P     
Sbjct: 30  SLCAVLVGRLYVLQVLQHDQQTAVSENNRVHVLPIAPERGLIYDRNGVVLADNKPS---- 85

Query: 99  ADPVAIYKEGGLVEKDRWYALADVLGL---DRQEMMKKIEDNRS-----RRFIYLQRQVS 150
            D     +  G         L  VLGL   DR++  K +   R         + L  +  
Sbjct: 86  FDLTMTRERAGGDSAKVLDTLTQVLGLTEDDRKQFDKDLRRGRKPFEPVTLMVGLSEEQI 145

Query: 151 PAMAKYIRELKLAGIGLKEESRRYYPAGEVSAHLVGVTG-----------------IDGH 193
             +A  + + +L G+ ++ +  R YP     AH VG  G                     
Sbjct: 146 ALVA--VNQFRLPGLEVEPQFIREYPLAGHFAHSVGYVGRINEKEAKTLDSTEYRGTQSI 203

Query: 194 GLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALEEREEGKPIQLTIDQRLQAIAFRA 253
           G  G+ER ++S L G  G      +  GRV+  +  ++   G+ I LT+D  LQ     A
Sbjct: 204 GKTGIERFYESQLHGHVGYEEVETNAQGRVMRVLNHKDPTPGQDIVLTLDAHLQI----A 259

Query: 254 VKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPNNRNDWQSFK------------MR 301
            ++A+ D R    S V+LD   G VLAMV+ PS++PN      SFK            + 
Sbjct: 260 AEKALGDRR---GSVVVLDPANGDVLAMVSNPSFDPNLFVKGISFKQYAALRDSIDRPLF 316

Query: 302 NRVITDAFEPGSTVKPFVVLAALANG-IADKNTIIDTGDGTMQIGGSRVRDTSKVGK--A 358
           NRV+   + PGSTVKP V +A L +G I   + + D G   +     + R+ ++ G    
Sbjct: 317 NRVLRGLYAPGSTVKPEVAIAGLDSGVITPGSRVFDPGYYELPNYDHKYRNWNRSGDGWV 376

Query: 359 DLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPN------- 411
           D+   + +S++     LA ++ ++ L    +  GLG+   LD+  E  G+ P+       
Sbjct: 377 DMYTAIMRSNDTYFYDLAHKLGIDRLHDYMAEFGLGQKVSLDMFEEASGLMPSAEWKRAT 436

Query: 412 -RRRWSQFEIATLSFGYG-LAITPIQLAHAYATLGNHGKYQPIHI---IKGDQHGETRQV 466
            R+ W   E   L  G G + +TP+QLA A + L + G +   H+   + GD   +   +
Sbjct: 437 RRQAWFPGETLILGIGQGYMQVTPLQLAQATSLLASKGVWHRPHLAMTVGGDTPIDPNPM 496

Query: 467 VD----PKYV-NQVLEMLETVTQPGGTATRAAVPG--YRIAAKSGTSRKAIAGGYSDEY- 518
            D     K+  +QV + ++ V        RAA  G  YRIA KSGT+ + +A    + Y 
Sbjct: 497 PDIVLHDKHAWDQVSQGMQMVMHDPRGIARAAAAGAQYRIAGKSGTA-QVVAIKQGERYN 555

Query: 519 ----------FAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPVFSEIMKGAL 565
                      A   G AP   P + + VM+   +     GG VAGPV  E+M   L
Sbjct: 556 RNKTLERHRDNALFVGFAPAEHPSVVVAVMIENGEA----GGRVAGPVVREVMDAYL 608