Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., peptidoglycan DD transpeptidase from Pseudomonas putida KT2440

 Score =  437 bits (1123), Expect = e-127
 Identities = 234/552 (42%), Positives = 349/552 (63%), Gaps = 11/552 (1%)

Query: 28  WRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEA 87
           WRF +++  +     A+  R+  +Q+++ D L  +GD RS+R   + + RG+I+DRNGE 
Sbjct: 11  WRFRVVIGLLAIMVGAICWRIIDLQVVDRDFLKGQGDARSLRHIPIPAHRGLITDRNGEP 70

Query: 88  LAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVLGLDRQEMMKKIEDNRSRRFIYLQR 147
           LAVS PV  +WA+P  +        K+RW  LA  LG + Q++++++    ++ FIYL R
Sbjct: 71  LAVSTPVTTLWANPKEMQ-----ASKERWPQLAAALGQNPQQLIERLTQQANKEFIYLVR 125

Query: 148 QVSPAMAKYIRELKLAGIGLKEESRRYYPAGEVSAHLVGVTGIDGHGLEGVERSFDSTLT 207
            ++P   +++ +LK+ G+   EE RR+YPAG+V+AH+VG T +D HG EGVE +++  L 
Sbjct: 126 GLTPEQGQHVLDLKVPGVYGLEEFRRFYPAGDVTAHMVGFTDLDDHGREGVELAYEEWLA 185

Query: 208 GESGKSVTRKDKFGRVVENIALEEREE-GKPIQLTIDQRLQAIAFRAVKQAMADYRATSA 266
           G  GK    KD+ GR++++I + +  + GK + L+ID RLQ +A R ++ A+A+  A + 
Sbjct: 186 GVPGKRQVIKDRRGRLIKDIQVTKNAKAGKTLALSIDLRLQYLATRELRNAIAEQDAKAG 245

Query: 267 SAVMLDVKTGAVLAMVNAPSYNPNNRNDWQSFKMRNRVITDAFEPGSTVKPFVVLAALAN 326
           S V++DVKTG VLAMVN P+YNPNNR       MRNR I D FEPGSTVKP  + AAL +
Sbjct: 246 SLVIMDVKTGEVLAMVNQPTYNPNNRRSMFPAAMRNRAIIDVFEPGSTVKPISMSAALQS 305

Query: 327 GIADKNTIIDTGDGTMQIGGSRVRDTSKVGKA--DLTLILKKSSNIGVAKLALEMPLEAL 384
           G       ++   G++QIG   ++D S+      DLT IL  SSN+G++K+A ++  EA+
Sbjct: 306 GRWKPTDKVEVYPGSLQIGRYTIKDVSRSEGPILDLTGILINSSNVGMSKIAFDIGGEAI 365

Query: 385 LGMYSSVGLGEMSGLDLVGETIGIFPNRRRWSQFEIATLSFGYGLAITPIQLAHAYATLG 444
             + S VGLG+ +GL   GE +G  PN R W + E ATLS+GYG+++T +QL HAYA L 
Sbjct: 366 YRVMSQVGLGQYTGLGFPGERVGNLPNHREWRKAETATLSYGYGVSVTALQLVHAYAALA 425

Query: 445 NHGKYQPIHIIKGDQHGETRQVVDPKYVNQVLEMLETVTQPGGTATRAAVPGYRIAAKSG 504
           N GK  P+ IIK D+  E  Q +  +    V  ML+ V +      RA VP Y +A KSG
Sbjct: 426 NDGKMVPLSIIKVDKTPEAVQAIPKEVAETVQGMLQQVIEAPRGVFRAQVPFYHVAGKSG 485

Query: 505 TSRKAIAG--GYSDE-YFAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPVFSEIM 561
           T+RKA  G  GY++  Y +  AG  P+SDPR ++VV+++EP+   Y+GG V+ PVFS +M
Sbjct: 486 TARKATVGAKGYTENAYRSLFAGFGPMSDPRYAIVVVIDEPRKGGYFGGLVSAPVFSNVM 545

Query: 562 KGALQILNIAPD 573
            G L+++N+ PD
Sbjct: 546 SGTLRLMNVPPD 557