Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 627 a.a., penicillin-binding protein 2 from Magnetospirillum magneticum AMB-1

 Score =  162 bits (411), Expect = 3e-44
 Identities = 163/594 (27%), Positives = 254/594 (42%), Gaps = 96/594 (16%)

Query: 43  ALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEAVWADPV 102
           AL AR+ Y+Q++E D    + +   I  + L   RG+I DRNG A+AV+     V   P 
Sbjct: 28  ALAARMYYLQVMEADKYAVQAEDNRISTRLLAPPRGLILDRNGIAMAVNQHNYRVMVVPE 87

Query: 103 AIYKEGGLVEKDRWYALADVLGL---DRQEMMKKIEDNRSRRFIYLQRQVSPAMAKYIR- 158
                   ++     ALA ++ +   DR  + K++   R R F+ L  + +    +  R 
Sbjct: 88  QTPSLDYTLD-----ALAKIIAIGDGDRSRIHKEVR--RRRSFVPLSVRENLTWEEVARV 140

Query: 159 ---ELKLAGIGLKEESRRYYPAGEVSAHLVGVTG------IDGHGLE----------GVE 199
                 L G+ +     RYYP   + AH++G         + G  LE          GVE
Sbjct: 141 EVNAADLPGVVIDVGQSRYYPLESLGAHILGYVSAVSENELSGDPLEELPGFRIGKGGVE 200

Query: 200 RSFDSTLTGESGKSVTRKDKFGRVVENIALEEREEGKPIQLTIDQRLQAIAFRAVKQAMA 259
           R +D  L G  G S    +  GRV+  +  +E E G  + LT+D +LQ  A + + +   
Sbjct: 201 RIYDMALRGRHGTSTLEVNSVGRVIRELERKEGEPGLDLNLTLDMKLQEYAAQRLGE--- 257

Query: 260 DYRATSASAVMLDVKTGAVLAMVNAPSYNPNNRN------DWQSFK------MRNRVITD 307
                SA+ V++D+ TG V+ M + PS++PN+ N      +W+         + N+ I  
Sbjct: 258 ----ESAAVVVMDIHTGDVVVMASTPSFDPNSFNRGLSNEEWKDLSTNPRSPLTNKAIGG 313

Query: 308 AFEPGSTVKPFVVLAAL-ANGIADKNTIIDTGDGTMQIGGSRVRDTSKVGKA--DLTLIL 364
            F PGST K    LAAL A  I  +  +  +G    Q+G  +     K G    DL   +
Sbjct: 314 TFAPGSTFKMLTALAALEARDITPEMRVFCSGH--TQLGSLKFHCWKKEGHGAQDLVTGI 371

Query: 365 KKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPN--------RRRWS 416
           K S ++   ++A  +  E +  M    GLG  +G+DL GE  GI PN        ++ W 
Sbjct: 372 KNSCDVYFYEIARRVGYEKIAEMAKKFGLGAPTGIDLPGEKSGIIPNKAWKKATLKQPWY 431

Query: 417 QFEIATLSFGYG-LAITPIQLAHAYATLGNHGKYQPIHIIKGDQHGE--TRQVVDPKYVN 473
             E    + G G +  T +QLA   A + N G Y  +  +  DQ  E   +    P + +
Sbjct: 432 PGETLVNAIGQGYVTATAMQLATMTARIAN-GGYAVVPHVARDQISEKSAKSRATPSWPS 490

Query: 474 QVLE----------MLETVTQPGGTATRAAV--PGYRIAAKSG-------TSRKAIAG-- 512
             +           M     +PGGTA +A +   G  ++ K+G       T R+   G  
Sbjct: 491 LDVSRQSLALVRKGMFAVSNEPGGTAYKARITQEGMWLSGKTGSAQVRRITLRERETGVK 550

Query: 513 -----GYSDEYFAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPVFSEIM 561
                 + +   A     AP   PR S+ V+V    G    G AVA P+  +IM
Sbjct: 551 KNDQLPWKERDHALFVAYAPEESPRYSIAVIVEHGGG----GSAVAAPIARDIM 600