Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) (NCBI) from Escherichia coli BW25113

 Score =  149 bits (376), Expect = 3e-40
 Identities = 165/623 (26%), Positives = 276/623 (44%), Gaps = 96/623 (15%)

Query: 18  TAEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSAR 77
           TAE A +F+R R  +    +L     L+A +  +QI+   +     +   I+   +  +R
Sbjct: 11  TAESA-LFVR-RALVAFLGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSR 68

Query: 78  GIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVLGLDRQEMMK-KIED 136
           GII DRNG  LA++  +  +   P  +      ++     AL  V+ L   ++   + E 
Sbjct: 69  GIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLD-----ALRSVVDLTDDDIAAFRKER 123

Query: 137 NRSRRFIYLQRQVSPAMAKYIR----ELKLAGIGLKEESRRYYPAGEVSAHLVG-VTGID 191
            RS RF  +  + +    +  R    + +  G+ +K   RRYYP G    H++G V+ I+
Sbjct: 124 ARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKIN 183

Query: 192 GHGLE--------------------GVERSFDSTLTGESGKSVTRKDKFGRVVENIALEE 231
              +E                    G+ER ++  L G++G      +  GRV+  +    
Sbjct: 184 DKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVP 243

Query: 232 REEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPNN 291
            + G  I LT+D +LQ    + ++  +A  RA   + V+ D +TG VLA+V+ PSY+PN 
Sbjct: 244 PQAGHDIYLTLDLKLQ----QYIETLLAGSRA---AVVVTDPRTGGVLALVSTPSYDPNL 296

Query: 292 RNDWQSFK------------MRNRVITDAFEPGSTVKPFVVLAALANGIADKNTIIDTGD 339
             D  S K            + NR     + P STVKP+V ++AL+ G+  +NT +    
Sbjct: 297 FVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTL-FDP 355

Query: 340 GTMQIGGS--RVRDTSK--VGKADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGE 395
           G  Q+ GS  R RD  K   G+ ++T  L++S++    ++A +M ++ L       G G 
Sbjct: 356 GWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSEWMGKFGYGH 415

Query: 396 MSGLDLVGETIGIFPNR--------RRWSQFEIATLSFGYGL-AITPIQLAHAYATLGNH 446
            +G+DL  E  G  P R        + W Q +   +  G G    TPIQ++ A   L N 
Sbjct: 416 YTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILIND 475

Query: 447 GKYQPIHIIKGD-QHGETRQVVDPKY--VNQVLE---------MLETVTQPGGTATR--A 492
           G  +  H++    + G+    V P    V  +           M     +P GTA +  A
Sbjct: 476 GIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFA 535

Query: 493 AVPGYRIAAKSGTSRKAIAGGYSDEYF------------AYTAGVAPVSDPRISLVVMVN 540
           + P Y+IAAKSGT++  + G  ++E +                  AP ++P+++ V M+ 
Sbjct: 536 SAP-YKIAAKSGTAQ--VFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVA-VAMIL 591

Query: 541 EPQGDSYYGGAVAGPVFSEIMKG 563
           E  G     G +   +   IM G
Sbjct: 592 ENGGAGPAVGTLMRQILDHIMLG 614