Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., peptidoglycan DD-transpeptidase MrdA from Dickeya dianthicola ME23

 Score =  156 bits (395), Expect = 2e-42
 Identities = 161/623 (25%), Positives = 274/623 (43%), Gaps = 94/623 (15%)

Query: 18  TAEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSAR 77
           TAE A +F+R R  +    +L     LVA + ++Q++  D+     +   I+   +  +R
Sbjct: 12  TAEAA-LFVR-RALVAFLGILLLSGILVANLYHLQVLRFDDYRTRSNENRIKLVPIAPSR 69

Query: 78  GIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVLGLDRQEMMK-KIED 136
           GII DRNG  LA++  +  +   P  +        ++   AL  ++ L  +++   + E 
Sbjct: 70  GIIYDRNGTPLALNRTIYQLELIPEKVNNL-----EETLQALKSIIDLTDEDIDNFRKER 124

Query: 137 NRSRRFIYLQRQVS----PAMAKYIRELKLAGIGLKEESRRYYPAGEVSAHLVG-VTGID 191
            RSRRF  +  +         +  + + +  G+ +K   RRYYP G    H++G V+ I+
Sbjct: 125 KRSRRFTSIPVKTGLNEVQVASFAVNQYRFPGVEVKGYQRRYYPYGAALTHVIGYVSKIN 184

Query: 192 GHGLE--------------------GVERSFDSTLTGESGKSVTRKDKFGRVVENIALEE 231
              LE                    G+ER ++  L G+ G      +  GRV+  +  + 
Sbjct: 185 DKDLERLDQEGELADYAATHDIGKLGIERYYEDVLHGKPGYEEVEVNNRGRVIRQLHEQP 244

Query: 232 REEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPNN 291
            + GK I LT+D  LQ      +++ +A  R   A+ V+ D K  ++LAMV+ PSY+PN 
Sbjct: 245 PQAGKDITLTLDLNLQLY----IEKLLAGSR---AAVVVTDPKDASILAMVSTPSYDPNL 297

Query: 292 RNDWQSFK------------MRNRVITDAFEPGSTVKPFVVLAALANGIADKNT-IIDTG 338
             D  S K            + NR     + P STVKP++ ++AL+ G+    T + D G
Sbjct: 298 FVDGISSKTYHALLNDPNRPLINRATQGVYPPASTVKPYIAVSALSAGVITPYTSLFDPG 357

Query: 339 DGTMQIGGSRVRDTSK--VGKADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEM 396
              +     R RD  K   G+ +LT  L++S++    +++ +M ++ L    S  G G  
Sbjct: 358 WWQLPGSEKRFRDWKKWGHGRLNLTKSLEESADTFFYQVSYDMGIDRLSEWMSKFGYGHR 417

Query: 397 SGLDLVG--ETIGIFPNR--------RRWSQFEIATLSFGYGL-AITPIQLAHAYATLGN 445
           +G+DL    E+ GI P R        + W Q +   +  G G    TPIQ+  A  TL N
Sbjct: 418 TGIDLSDKEESPGIMPTREWKMKRYKKPWYQGDTIPVGIGQGYWTATPIQMLKALTTLIN 477

Query: 446 HGKYQPIHIIKGDQHGETRQVVDPKYVNQVLE------------MLETVTQPGGTATR-A 492
            G+ +  H++   Q   T+         Q+ +            M     +  GTA +  
Sbjct: 478 DGQVKAPHLLSSTQENNTQVPYRQSEHQQIGDIRSGYWEIVKDGMYGVANRQNGTAHKFF 537

Query: 493 AVPGYRIAAKSGTSRKAIAGGYSDEYF------------AYTAGVAPVSDPRISLVVMVN 540
           A   Y+IAAKSGT++  + G   +E +                  AP S+P++++ +++ 
Sbjct: 538 ADSSYKIAAKSGTAQ--VFGLKENETYNANRIAERLRDHKLMVAFAPYSNPKVAMSIIL- 594

Query: 541 EPQGDSYYGGAVAGPVFSEIMKG 563
           E  G     G +   +   IM G
Sbjct: 595 ENGGAGPAVGTIVRQILDHIMLG 617