Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., Peptidoglycan D,D-transpeptidase MrdA from Acinetobacter radioresistens SK82

 Score =  175 bits (443), Expect = 6e-48
 Identities = 172/628 (27%), Positives = 274/628 (43%), Gaps = 97/628 (15%)

Query: 1   MKKKAPAKASRVSPRVTTAEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLI 60
           MK+  P K  +   R+          R R ++ +  V      L    AY+QI   D   
Sbjct: 1   MKQHFPLKNEQQEKRI---------YRSRIFITMGIVAFFLLLLAGHYAYLQIAHYDEFS 51

Query: 61  KEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALA 120
              D   IR + +  ARG I DRNG  LA + PV +       I      + +     L 
Sbjct: 52  TASDKNRIRLQPIAPARGYIYDRNGILLADNYPVFSATMSRADIEDIEATLAR-----LT 106

Query: 121 DVLGLDRQEMMK---KIEDNRSRRFIYLQRQVSPAMAKYIRELK--LAGIGLKEESRRYY 175
            VL L  +++ +   +I+ +R    + ++  ++        ELK    G+ ++ +  RYY
Sbjct: 107 PVLSLTPEDIARFESRIKASRKTERVAIKMNLTETDIAKFSELKYQFPGVNIETQMTRYY 166

Query: 176 PAGEVSAHLVGVTG---------IDGH--------GLEGVERSFDSTLTGESGKSVTRKD 218
           P G++ AH++G  G         ID          G  GVE+S++  L G  G      D
Sbjct: 167 PHGDLFAHVIGYVGRINDKELKKIDKDLYAGTNLIGKIGVEKSYEELLHGIPGNESVEAD 226

Query: 219 KFGRVVENIALEEREEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAV 278
             G V+ N+  ++   G  + L+ID  LQ +A     + +A  R    + V LD +TG +
Sbjct: 227 AHGNVLRNLGRKDPVRGNDLYLSIDYGLQMVA----TEQLAGRR---GAIVALDPRTGEI 279

Query: 279 LAMVNAPSYNPN------NRNDWQSFK------MRNRVITDAFEPGSTVKPFVVLAALAN 326
           LA+V++PS+NPN      +  D+   +      + NR +  A+ PGST+KP   L  +  
Sbjct: 280 LALVSSPSFNPNLFVTGISHTDYSGLRDNLDQPLYNRAVQGAYPPGSTIKPMFGLGGIHY 339

Query: 327 GIADKNTII-DTGDGTMQIGGSRVRDTSKVGKADLTLILKKSSNIGVAK----LALEMPL 381
           G  D NT I D G  T+     R RD  K G   +   L K+ N+        L+  M +
Sbjct: 340 GYVDWNTAISDPGYFTLPGDSHRFRDHKKTGHGMVN--LHKAQNVSCDTYFYVLSYRMGI 397

Query: 382 EALLGMYSSVGLGEMSGLDLVGETIGIFPN--------RRRWSQFEIATLSFGYG-LAIT 432
           E +       G GE +G+DL  E+ G++PN        + +W + E  ++S G G    +
Sbjct: 398 EKMNTWMRQFGFGEKTGVDLPSESEGLYPNPEWKMRTRKAKWLKGETISVSIGQGAFTAS 457

Query: 433 PIQLAHAYATLGNHGKYQPIHIIKGDQHGETRQVVD-----------PKYVNQVLEMLET 481
           P+QLA A A   N G     H+++  +  +T  V +           P+   ++ E +  
Sbjct: 458 PLQLALATAITANQGSRVTPHVLRETRGTKTYHVHNGTNGKIQFNGTPEDWIKMREAMVD 517

Query: 482 VTQPG-GTATRAAVPGYRIAAKSGTSR-KAIAGG--YSDEYF-------AYTAGVAPVSD 530
           V Q G G   R+ +  Y IA K+GT++ K+IA G  Y++              G AP  +
Sbjct: 518 VIQTGTGKGIRSGL-SYHIAGKTGTAQVKSIAQGKRYNESLLTERQLDHGLFVGFAPAEN 576

Query: 531 PRISL-VVMVNEPQGDSYYGGAVAGPVF 557
           P I++ VV  N   G S     +A P+F
Sbjct: 577 PEIAIAVVWENGRHGGS--AAQLARPIF 602