Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Rhodanobacter sp000427505 FW510-R12

 Score = 86.7 bits (213), Expect = 2e-21
 Identities = 97/388 (25%), Positives = 157/388 (40%), Gaps = 36/388 (9%)

Query: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103
           +T + +D+R +K GD FVAI+G  VDG  ++ +A A+GA   L               + 
Sbjct: 22  VTGVAIDTRKLKPGDLFVAIRGERVDGHDYLAEAAARGAVAALVTRKVD---------SA 72

Query: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163
           +P + +      L +LA  +    + +++G+TG+NGKTT+  L+A  L   G      G 
Sbjct: 73  LPQLLVDNTELALGDLASAVRAQRNVRVVGITGSNGKTTVKTLVASILSRHGRTHVSAGN 132

Query: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA-- 221
                        N  G  L + A   D       Y   E  +     G +  L  +A  
Sbjct: 133 FN-----------NELGLPLSLLAMPPDTG-----YAVFEMGAG--KPGDIAYLAAIARP 174

Query: 222 --GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN-AIINVDDAVGAQWVKQLPQAIG 278
             G+ + ++  HL   G++E  A  K +L+        AIIN DDA  A +   L  A  
Sbjct: 175 DIGLVTLIAPAHLARMGSIEGVAETKGALYQSLPADGIAIINADDAF-ASFFAGLAGARR 233

Query: 279 VSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 338
           V        A  + A  V     G      +  G+ E+  PL G  N  N L A A  L+
Sbjct: 234 VLRFGLEQPAD-VGADIVEQRVDGSRFVLSTPQGDAEVALPLPGRHNIANALAATAVALA 292

Query: 339 LGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVD-YAHTPDALEKALRALRVHCAGQL 397
           L      ++A   ++  V GR+          ++ D Y   P ++  A+  L +   G+ 
Sbjct: 293 LEVPLGTIVAGLEQVPGVAGRLRRETMTGGWTLIDDSYNANPSSMAAAIDTLLL-AGGER 351

Query: 398 WAIVGCGGDRDRGKRPMMAAIAEQFADR 425
           W ++G   +     R + A I  +  +R
Sbjct: 352 WLVLGDMAELGPDARALHAGIGVRARER 379