Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase from Pseudomonas simiae WCS417

 Score =  372 bits (954), Expect = e-107
 Identities = 211/469 (44%), Positives = 282/469 (60%), Gaps = 7/469 (1%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           L+I  L LDSR +++GD F+A+ G   DGR  I  A+ +GA  V  E +   +    +  
Sbjct: 16  LLIRELSLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVAYEVEGATVLPITD-- 73

Query: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQ--LIGVTGTNGKTTITQLIAQWLELLGHKAA 159
             VP+I +  L   LS++AGR YG    Q  LIGVTGTNGKT++TQLIAQ L+LLG    
Sbjct: 74  --VPLIPVKGLAAQLSDIAGRFYGDPSRQVNLIGVTGTNGKTSVTQLIAQALDLLGQHCG 131

Query: 160 VMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHF 219
           ++GT G GF  AL+   +TT N + +QATL DL + GA+  A+E SSHGL QGRV  L F
Sbjct: 132 IVGTLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLHQGRVAALAF 191

Query: 220 VAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGV 279
              V +NLSRDHLDYHGTMEAYAA K  LF+ +  +  ++N+DDA G Q   +  ++  +
Sbjct: 192 DVAVMTNLSRDHLDYHGTMEAYAAEKAKLFAWNDLKCRVVNLDDAFGRQLAAEDRESRLI 251

Query: 280 SLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339
           S   +  +A  ++ RE  + + G+     +  GE  L + L+G FN  N L A+  LL L
Sbjct: 252 SYSLEDASAY-LYCREAQFNDEGVRATLVTPQGEHHLRSSLLGRFNLSNTLAAVGALLGL 310

Query: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLWA 399
            +    +L   PKL   +GRM+     ++  +VVDYAHTPDALEK L ALR H  G+L  
Sbjct: 311 EYALDEILRVLPKLEGPVGRMQRLGGGKQPLVVVDYAHTPDALEKVLVALRPHAKGKLLC 370

Query: 400 IVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEH 459
           + GCGGDRDRGKRP+MA I E+ AD V++TDDNPRSE P  I  D+  G     +A    
Sbjct: 371 LFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDDIRVGFKDVSKATFVA 430

Query: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQQLL 508
            R  A +  +  AGA D+++LAGKGHEDYQ +  E   +SD   A   L
Sbjct: 431 GRGVAIAQLIASAGADDVVVLAGKGHEDYQEINGERHAFSDLVEADHAL 479