Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

 Score =  286 bits (732), Expect = 1e-81
 Identities = 192/514 (37%), Positives = 263/514 (51%), Gaps = 40/514 (7%)

Query: 26  ELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLV 85
           +L+A WL+   P+ A      +  DSR + +GD FVA  G A DGR+ +  A+AQGA + 
Sbjct: 8   QLVAAWLKERAPQAA------MHADSRAVGAGDIFVAWPGAATDGRKHVASALAQGAAVC 61

Query: 86  LAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQL--IGVTGTNGKTTI 143
           L E +     G   +     ++    L      +A   Y      L  + VTGTNGKT+ 
Sbjct: 62  LVEHEGVEPFG---FDGDERIVSYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTST 118

Query: 144 TQLIAQWLELLG-------------------HKAAVMGTTGNGFLNALEPAANTTGNALQ 184
              +A+ L  L                       AVMGT G G    L     TT + + 
Sbjct: 119 AWWLAESLSTLRAAGGVRVMKPDGTMQRDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVM 178

Query: 185 IQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAA 244
           +Q  LR L ERG    A+E SS G+ + R+        VF+N ++DHLDYHG+M+AY  A
Sbjct: 179 MQRELRSLVERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQA 238

Query: 245 KFSLFSEHACQNAIINVDDAVGAQWVKQLPQA----IGVSLVTKPNTAQAIWAREVAYAE 300
           K  LF     + A+IN+DD  GA     L  A    + V  V+       + AR++ Y  
Sbjct: 239 KAELFRWPGLRAAVINIDDTHGASLCANLIDAGIGALDVWTVSAGGKPARLVARDIGYDA 298

Query: 301 SGITLNF--ESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLG 358
            G+  +     +     L   LIG++N  NLL  L TL +LG   +   A    L  V G
Sbjct: 299 QGLQFSVAEHGTAAVERLSTGLIGQYNVANLLGVLGTLRALGLTLAQAAAACANLTSVPG 358

Query: 359 RMELFQREQKAKM-VVDYAHTPDALEKAL---RALRVHCAGQLWAIVGCGGDRDRGKRPM 414
           RM+       A + VVDYAHTPDAL+KAL   R L     G LW + GCGGDRD  KRPM
Sbjct: 359 RMDRAGTGDGAPLAVVDYAHTPDALDKALIGLRPLAQQRGGALWCLFGCGGDRDPIKRPM 418

Query: 415 MAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGA 474
           MAA+AE+ ADRVI+T DNPRSE P AI++ ++ G + PE A ++  R  A + A+  A  
Sbjct: 419 MAAVAERQADRVIVTSDNPRSEKPDAIISQVLLGFSRPEVAQVQPDRALAIADAIAQAAP 478

Query: 475 QDIILLAGKGHEDYQVLANETIHYSDRETAQQLL 508
           QD++L+AGKGHE +Q +A + I +SD+  A Q L
Sbjct: 479 QDVVLIAGKGHEAWQEIAGQRIEFSDKTHALQAL 512