Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6- diaminopimelate ligase (EC 6.3.2.13) from Sphingobium sp. HT1-2

 Score =  267 bits (682), Expect = 7e-76
 Identities = 173/466 (37%), Positives = 249/466 (53%), Gaps = 15/466 (3%)

Query: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103
           +T   +D+R +  G  F A QG  V+G  FI  A+  GA  ++A  +A+     VE   G
Sbjct: 24  VTGFAIDNRKVAPGTIFGAFQGLRVNGEDFIADAVKAGAVAIVARPEAK-----VE---G 75

Query: 104 VPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGT 163
              I  A   + L++LA R +    +  + VTGTNGKT+  +L  Q   +LGHK+A +GT
Sbjct: 76  AVHIADANPRRLLAQLAARYFAPFPDVTVAVTGTNGKTSTVELARQLWRMLGHKSASIGT 135

Query: 164 TGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGV 223
            G            TT + +   A +  L   G  + A E SSHGL Q R + L   AG 
Sbjct: 136 LGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEASSHGLDQYRTEGLPVAAGA 195

Query: 224 FSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGVSL 281
           F+NLSRDHLDYHG M++Y  AK  LF E       A+I  DD    + +++  +  G+ +
Sbjct: 196 FTNLSRDHLDYHGDMDSYFDAKMRLFDEVVGDGGAAVIWADDEWSDKAIQRATKR-GLRV 254

Query: 282 VTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGF 341
           ++     QA+        + G TL  E+     +++ PLIG + A N L A   +++ G 
Sbjct: 255 LSVGVQGQALRLANRTPTQLGQTLEIEADGKIYKVNLPLIGAYQAANALTAAGLVIATGG 314

Query: 342 EKSALLATAPKLRPVLGRME-LFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLWAI 400
           + + +L    +++PV GR+E     +  A + VDYAHTPD L  A+ ALR H  G+L A+
Sbjct: 315 DTAKVLELLGRVQPVRGRLERAVISKAGAPVYVDYAHTPDGLRAAIEALRPHTRGKLIAL 374

Query: 401 VGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEHH 460
            G GGDRD GKRP+M  +A   AD VI+TDDNPRSE P AI A ++AG    E       
Sbjct: 375 FGAGGDRDAGKRPLMGKVAADLADHVIVTDDNPRSEEPSAIRAAVMAGAPGAEEI---GG 431

Query: 461 RFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQQ 506
           R  A + A+  AG  DI+LLAGKGHE  Q++ +  + + D   A++
Sbjct: 432 RRAAIAAAIGQAGGDDIVLLAGKGHEQGQIIGDRVLPFDDVTVARE 477